PDB entry 4k3d

View 4k3d on RCSB PDB site
Description: Crystal structure of bovine antibody BLV1H12 with ultralong CDR H3
Class: immune system
Keywords: immunoglobulin, cystine knot, immune recognition, immune system
Deposited on 2013-04-10, released 2013-06-19
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-07-03, with a file datestamp of 2013-06-28.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.184
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: bovine antibody with ultralong cdr h3, heavy chain
    Species: Bos taurus [TaxId:9913]
    Gene: IGH
    Database cross-references and differences (RAF-indexed):
    • PDB 4K3D (0-End)
  • Chain 'I':
    Compound: bovine antibody with ultralong cdr h3, heavy chain
    Species: Bos taurus [TaxId:9913]
    Gene: IGH
    Database cross-references and differences (RAF-indexed):
    • PDB 4K3D (0-End)
  • Chain 'L':
    Compound: bovine antibody with ultralong cdr h3, light chain
    Species: Bos taurus [TaxId:9913]
    Gene: IGL, IGL@
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3T101 (1-215)
      • see remark 999 (4)
      • see remark 999 (80)
    Domains in SCOPe 2.04: d4k3dl1, d4k3dl2
  • Chain 'M':
    Compound: bovine antibody with ultralong cdr h3, light chain
    Species: Bos taurus [TaxId:9913]
    Gene: IGL, IGL@
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q3T101
      • see remark 999 (4)
      • see remark 999 (80)
    Domains in SCOPe 2.04: d4k3dm1, d4k3dm2
  • Heterogens: K, CIT, HOH

PDB Chain Sequences:

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >4k3dL (L:)
    eavlnqpssvsgslgqrvsitcsgsssnvgngyvswyqlipgsaprtliygdtsrasgvp
    drfsgsrsgntatltisslqaedeadyfcasaedsssnavfgsgttltvlgqpksppsvt
    lfppsteelngnkatlvclisdfypgsvtvvwkadgstitrnvettraskqsnskyaass
    ylsltssdwkskgsyscevthegstvtktvkpsecs
    

    Sequence, based on observed residues (ATOM records): (download)
    >4k3dL (L:)
    avlnqpssvsgslgqrvsitcsgsssnvgngyvswyqlipgsaprtliygdtsrasgvpd
    rfsgsrsgntatltisslqaedeadyfcasaedsssnavfgsgttltvlgqpksppsvtl
    fppsteelngnkatlvclisdfypgsvtvvwkadgstitrnvettraskqsnskyaassy
    lsltssdwkskgsyscevthegstvtktvkpsecs
    

  • Chain 'M':
    Sequence, based on SEQRES records: (download)
    >4k3dM (M:)
    eavlnqpssvsgslgqrvsitcsgsssnvgngyvswyqlipgsaprtliygdtsrasgvp
    drfsgsrsgntatltisslqaedeadyfcasaedsssnavfgsgttltvlgqpksppsvt
    lfppsteelngnkatlvclisdfypgsvtvvwkadgstitrnvettraskqsnskyaass
    ylsltssdwkskgsyscevthegstvtktvkpsecs
    

    Sequence, based on observed residues (ATOM records): (download)
    >4k3dM (M:)
    vlnqpssvsgslgqrvsitcsgsssnvgngyvswyqlipgsaprtliygdtsrasgvpdr
    fsgsrsgntatltisslqaedeadyfcasaedsssnavfgsgttltvlgqpksppsvtlf
    ppsteelngnkatlvclisdfypgsvtvvwkadgstitrnvettraskqsnskyaassyl
    sltssdwkskgsyscevthegstvtktvkpsec