PDB entry 4jun

View 4jun on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 5
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-11-19, with a file datestamp of 2014-11-14.
Experiment type: XRAY
Resolution: 2.34 Å
R-factor: 0.203
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2F4V6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4juna_
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4junb_
  • Chain 'C':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2F4V6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4junc_
  • Chain 'D':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4jund_
  • Chain 'E':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2F4V6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4june_
  • Chain 'F':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:365085]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4junf_
  • Heterogens: NAG, EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4junA (A:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
qiipksswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllv
lwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilk
pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
hpltigecpkyvkssrlvlatglrnspqr

    Sequence, based on observed residues (ATOM records): (download) 
    >4junA (A:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
sswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvkssrlvlatglrns

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4junB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4junB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4junC (C:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
qiipksswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllv
lwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilk
pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
hpltigecpkyvkssrlvlatglrnspqr

    Sequence, based on observed residues (ATOM records): (download) 
    >4junC (C:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
sswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvkssrlvlatglrns

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4junD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4junD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyse

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4junE (E:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
qiipksswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllv
lwgihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilk
pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
hpltigecpkyvkssrlvlatglrnspqr

    Sequence, based on observed residues (ATOM records): (download) 
    >4junE (E:)
gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpicdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
sswsnheassgvssacpyqgrpsffrnvvwlikknsayptikrsynntsqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvkssrlvlatglrns

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4junF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4junF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
rvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseea