PDB entry 4jum

View 4jum on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 4
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-05-07, with a file datestamp of 2014-05-02.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.179
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:407713]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0FFQ6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.06: d4juma1, d4juma2
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:407713]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4jumb_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jumA (A:)
gsadpgdqicigyhannstvqvdtimeknvtvthaqdilekthngklcsldgvkplilrd
csvagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
qiipksswpnheaslgvssacpylgessffrnvvwlikknssyptikrsynntnqedllv
lwgihhpndaaeqiklyqnpntyisvgtstlnqrlvptiatrskvngqsgrmeffwtilk
pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
hpltigecpkyvksnrlvlatglrntlqr

    Sequence, based on observed residues (ATOM records): (download) 
    >4jumA (A:)
gdqicigyhannstvqvdtimeknvtvthaqdilekthngklcsldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
sswpnheaslgvssacpylgessffrnvvwlikknssyptikrsynntnqedllvlwgih
hpndaaeqiklyqnpntyisvgtstlnqrlvptiatrskvngqsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlatglrnt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4jumB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgitnkvnsiinkmn
tqfeavgrefsnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcddecmesvkngtydypqyseearlnreeingvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4jumB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgitnkvnsiinkmn
tqfeavgrefsnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcddecmesvkngtydypqyseearlnr