PDB entry 4jum

View 4jum on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 4
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-05-07, with a file datestamp of 2014-05-02.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.179
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:407713]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0FFQ6 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4juma_
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:407713]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4jumb_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4jumA (A:)
    gsadpgdqicigyhannstvqvdtimeknvtvthaqdilekthngklcsldgvkplilrd
    csvagwllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfeki
    qiipksswpnheaslgvssacpylgessffrnvvwlikknssyptikrsynntnqedllv
    lwgihhpndaaeqiklyqnpntyisvgtstlnqrlvptiatrskvngqsgrmeffwtilk
    pndainfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhni
    hpltigecpkyvksnrlvlatglrntlqr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4jumA (A:)
    gdqicigyhannstvqvdtimeknvtvthaqdilekthngklcsldgvkplilrdcsvag
    wllgnpmcdefinvpewsyivekaspandlcypgdfndyeelkhllsrinhfekiqiipk
    sswpnheaslgvssacpylgessffrnvvwlikknssyptikrsynntnqedllvlwgih
    hpndaaeqiklyqnpntyisvgtstlnqrlvptiatrskvngqsgrmeffwtilkpndai
    nfesngnfiapeyaykivkkgdsaimkseleygncntkcqtpmgainssmpfhnihplti
    gecpkyvksnrlvlatglrnt
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4jumB (B:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgitnkvnsiinkmn
    tqfeavgrefsnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcddecmesvkngtydypqyseearlnreeingvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4jumB (B:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgitnkvnsiinkmn
    tqfeavgrefsnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcddecmesvkngtydypqyseearlnr