PDB entry 4jul

View 4jul on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 2.3.4
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-05-07, with a file datestamp of 2014-05-02.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: 0.199
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4jula_
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4julb_
  • Chain 'C':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4julc_
  • Chain 'D':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4juld_
  • Chain 'E':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.05: d4jule_
  • Chain 'F':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4julf_
  • Chain 'H':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4julh_
  • Chain 'I':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4juli_
  • Chain 'J':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00G25 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.05: d4julj_
  • Chain 'K':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4julk_
  • Chain 'L':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4jull_
  • Chain 'M':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:393616]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4julm_
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4julA (A:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
    qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
    lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
    pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
    hpltigecpkyvksnklvlatglrnsplr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julA (A:)
    gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
    wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
    sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
    hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
    nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
    gecpkyvksnklvlatglrns
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4julB (B:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julB (B:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4julC (C:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
    qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
    lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
    pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
    hpltigecpkyvksnklvlatglrnsplr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julC (C:)
    gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
    wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
    sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
    hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
    nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
    gecpkyvksnklvlatglrns
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4julD (D:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julD (D:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4julE (E:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
    qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
    lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
    pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
    hpltigecpkyvksnklvlatglrnsplr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julE (E:)
    pgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
    gwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiip
    ksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgi
    hhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpnda
    infesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplt
    igecpkyvksnklvlatglrns
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4julF (F:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julF (F:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >4julH (H:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
    qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
    lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
    pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
    hpltigecpkyvksnklvlatglrnsplr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julH (H:)
    gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
    wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
    sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
    hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
    nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
    gecpkyvksnklvlatglrns
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >4julI (I:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julI (I:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkr
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >4julJ (J:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
    qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
    lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
    pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
    hpltigecpkyvksnklvlatglrnsplr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julJ (J:)
    gdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
    wllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipk
    sswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgih
    hsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndai
    nfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihplti
    gecpkyvksnklvlatglrns
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >4julK (K:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julK (K:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkree
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >4julL (L:)
    gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
    csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
    qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
    lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
    pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
    hpltigecpkyvksnklvlatglrnsplr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julL (L:)
    qicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagwl
    lgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipkss
    wsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedllilwgihhs
    ndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilkpndainf
    esngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhnihpltige
    cpkyvksnklvlatglrns
    

  • Chain 'M':
    Sequence, based on SEQRES records: (download)
    >4julM (M:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
    pr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4julM (M:)
    glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
    tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
    kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlk