SCOPe 2.05: Structural Classification of Proteins

PDB entry 4jul

View 4jul on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 2.3.4
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-05-07, with a file datestamp of 2014-05-02.
Experiment type: XRAY
Resolution: 2.79 Å
R-factor: 0.199
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (6-End)
  - expression tag (5)
Domains in SCOPe 2.05: d4jula_
Chain 'B':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (0-End)
Domains in SCOPe 2.05: d4julb_
Chain 'C':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (6-End)
  - expression tag (5)
Domains in SCOPe 2.05: d4julc_
Chain 'D':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (0-End)
Domains in SCOPe 2.05: d4juld_
Chain 'E':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (6-End)
  - expression tag (4-5)
Domains in SCOPe 2.05: d4jule_
Chain 'F':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (0-End)
Domains in SCOPe 2.05: d4julf_
Chain 'H':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (6-End)
  - expression tag (5)
Domains in SCOPe 2.05: d4julh_
Chain 'I':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (0-End)
Domains in SCOPe 2.05: d4juli_
Chain 'J':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (6-End)
  - expression tag (5)
Domains in SCOPe 2.05: d4julj_
Chain 'K':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (0-End)
Domains in SCOPe 2.05: d4julk_
Chain 'L':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25
Domains in SCOPe 2.05: d4jull_
Chain 'M':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:393616]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Uniprot Q00G25 (0-End)
Domains in SCOPe 2.05: d4julm_
Heterogens: NAG

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4julA (A:)
gsadpgdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipksswsdheassgvssacpyqgtpsffrnvvwlikknntyptikrsynntnqedlli
lwgihhsndaaeqtklyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmdffwtilk
pndainfesngnfiapeyaykivkkgdsaiikseveygncntkcqtpigainssmpfhni
hpltigecpkyvksnklvlatglrnsplr