PDB entry 4juk

View 4juk on RCSB PDB site
Description: Crystal structure of H5N1 influenza virus hemagglutinin, clade 2.3.2.1
Class: viral protein
Keywords: hemagglutinin, viral protein, viral envelope protein, viral fusion protein, sialic acid, glycosylation
Deposited on 2013-03-25, released 2014-05-07
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-05-07, with a file datestamp of 2014-05-02.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.231
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemagglutinin HA1
    Species: Influenza A virus [TaxId:573943]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4juka_
  • Chain 'B':
    Compound: hemagglutinin HA2
    Species: Influenza A virus [TaxId:573943]
    Gene: HA, hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4jukb_
  • Heterogens: SO4, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jukA (A:)
gsadpgdhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkd
csvagwllgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfeki
qiipkdswsdheaslgvssacpyqgnssffrnvvwlikkgnayptikksynntnqedllv
lwgihhpndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskvngqsgridffwtilk
pndainfesngnfiapeyaykivkkgdstimkseveygncntrcqtpmgainssmpfhni
hpltigecpkyvksnklvlatglrnspqr

    Sequence, based on observed residues (ATOM records): (download) 
    >4jukA (A:)
dhicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilkdcsvagw
llgnpmcdefinvpewsyivekanpandlcypgnfndyeelkhllsrinhfekiqiipkd
swsdheaslgvssacpyqgnssffrnvvwlikkgnayptikksynntnqedllvlwgihh
pndeaeqtrlyqnpttyisigtstlnqrlvpkiatrskvngqsgridffwtilkpndain
fesngnfiapeyaykivkkgdstimkseveygncntrcqtpmgainssmpfhnihpltig
ecpkyvksnklvlatglrns

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4jukB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkreeisgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4jukB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseearlkr