PDB entry 4jpi
View 4jpi on RCSB PDB site
Description: Crystal structure of a putative VRC01 germline precursor Fab
Class: immune system
Keywords: anti-HIV-1, gp120, CD4 binding site-targeting, VRC01 broadly neutralizing antibody, IMMUNE SYSTEM
Deposited on
2013-03-19, released
2013-04-10
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-11-15, with a file datestamp of
2017-11-10.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Putative VRC01 germline Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Putative VRC01 germline Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4jpib1, d4jpib2 - Chain 'H':
Compound: Putative VRC01 germline Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Putative VRC01 germline Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4jpil1, d4jpil2 - Heterogens: GOL, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4jpiB (B:)
eivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgipa
rfsgsgsgtdftltisslepedfavyycqqyeffgqgtkleikrstvapsvfifppsdeq
lksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlska
dyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>4jpiB (B:)
ivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgipar
fsgsgsgtdftltisslepedfavyycqqyeffgqgtkleikrstvapsvfifppsdeql
ksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlskad
yekhkvyacevthqglsspvtksfnrg
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>4jpiL (L:)
eivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgipa
rfsgsgsgtdftltisslepedfavyycqqyeffgqgtkleikrstvapsvfifppsdeq
lksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlska
dyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>4jpiL (L:)
ivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprlliydasnratgipar
fsgsgsgtdftltisslepedfavyycqqyeffgqgtkleikrstvapsvfifppsdeql
ksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlskad
yekhkvyacevthqglsspvtksfnr