PDB entry 4jka

View 4jka on RCSB PDB site
Description: Open and closed forms of R1865A human PRP8 RNase H-like domain with bound Co ion
Class: RNA binding protein
Keywords: metalloprotein, conformational change, RNA BINDING PROTEIN
Deposited on 2013-03-09, released 2013-05-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 1.32 Å
R-factor: N/A
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pre-mRNA-processing-splicing factor 8
    Species: Homo sapiens [TaxId:9606]
    Gene: PRP8, PRPC8, PRPF8
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6P2Q9 (Start-221)
      • engineered mutation (96)
    Domains in SCOPe 2.08: d4jkaa_
  • Chain 'B':
    Compound: Pre-mRNA-processing-splicing factor 8
    Species: Homo sapiens [TaxId:9606]
    Gene: PRP8, PRPC8, PRPF8
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6P2Q9
      • engineered mutation (96)
    Domains in SCOPe 2.08: d4jkab_
  • Heterogens: CO, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4jkaA (A:)
    gelfsnqiiwfvddtnvyrvtihktfegnlttkpingaififnprtgqlflkiihtsvwa
    gqkrlgqlakwktaeevaalirslpveeqpkqiivtakgmldplevhlldfpnivikgse
    lqlpfqaclkvekfgdlilkatepqmvlfnlyddwlktissytafsrlililralhvnnd
    rakvilkpdkttitephhiwptltdeewikvevqlkdlilad
    

    Sequence, based on observed residues (ATOM records): (download)
    >4jkaA (A:)
    lfsnqiiwfvddtnvyrvtihktfegnlttkpingaififnprtgqlflkiihtsvwagq
    krlgqlakwktaeevaalirslpveeqpkqiivtakgmldplevhlldfpnivikgselq
    lpfqaclkvekfgdlilkatepqmvlfnlyddwlktissytafsrlililralhvnndra
    kvilkpdkttitephhiwptltdeewikvevqlkdlilad
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4jkaB (B:)
    gelfsnqiiwfvddtnvyrvtihktfegnlttkpingaififnprtgqlflkiihtsvwa
    gqkrlgqlakwktaeevaalirslpveeqpkqiivtakgmldplevhlldfpnivikgse
    lqlpfqaclkvekfgdlilkatepqmvlfnlyddwlktissytafsrlililralhvnnd
    rakvilkpdkttitephhiwptltdeewikvevqlkdlilad
    

    Sequence, based on observed residues (ATOM records): (download)
    >4jkaB (B:)
    elfsnqiiwfvddtnvyrvtihktfegnlttkpingaififnprtgqlflkiihtsvwag
    qkrlgqlakwktaeevaalirslpveeqpkqiivtakgmldplevhlldfpnivikgsel
    qlpfqaclkvekfgdlilkatepqmvlfnlyddwlktissytafsrlililralhvnndr
    akvilkpdkttitephhiwptltdeewikvevqlkdlila