PDB entry 4jgy

View 4jgy on RCSB PDB site
Description: Crystal structure of human coxsackievirus A16 uncoating intermediate (space group P4232)
Class: virus
Keywords: virus, hand-foot-and-mouth disease, picornavirus uncoating, pocket factor, icosahedral virus
Deposited on 2013-03-04, released 2013-06-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-06-19, with a file datestamp of 2013-06-14.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.227
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polyprotein, capsid protein VP1
    Species: Human coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4jgya_
  • Chain 'B':
    Compound: Polyprotein, capsid protein VP2
    Species: Human coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4jgyb_
  • Chain 'C':
    Compound: Polyprotein, capsid protein VP3
    Species: Human coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4jgyc_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jgyA (A:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgi
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records): (download) 
    >4jgyA (A:)
nlietrcvlnhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlrr
kcelftymrfdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvfv
kmtdppaqvsvpfmspasayqwfydgyptdldygqcpnnmmgtfsirtvgieksphsitl
rvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4jgyB (B:)
spsaeacgysdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsv
nrfftldtkswakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqg
allvavlpeyvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcph
qwinlrtnncatiivpymntvpfdsalnhcnfgllvipvvpldfntgatseipitvtiap
mcaefaglrqavkq

    Sequence, based on observed residues (ATOM records): (download) 
    >4jgyB (B:)
acgysdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsvnrfft
ldtkswakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqgallva
vlpeyvlgtiaenshppyattqpgqvgavlthpyvldagiplsqltvcphqwinlrtnnc
atiivpymntvpfdsalnhcnfgllvipvvpldfntgatseipitvtiapmcaefaglr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4jgyC (C:)
giptelkpgtnqflttddgvsapilpgfhptppihipgevhnlleicrvetilevnnlkt
nettpmqrlcfpvsvqsktgelcaafradpgrdgpwqstilgqlcryytqwsgslevtfm
fagsfmatgkmliaytppggnvpadritamlgthviwdfglqssvtlvvpwisnthyrah
aragyfdyyttgiitiwyqtnyvvpigapttayivalaaaqdnftmklckdtedieqtan
iq

    Sequence, based on observed residues (ATOM records): (download) 
    >4jgyC (C:)
giptelkpgtnqflttddgvsapilpgfhptppihipgevhnlleicrvetilevnnlkt
nettpmqrlcfpvsvqsktgelcaafradpgrdgpwqstilgqlcryytqwsgslevtfm
fagsfmatgkmliaytppggnvpadritamlgthviwdfglqssvtlvvpwisnthyray
fdyyttgiitiwyqtnyvvpigapttayivalaaaqdnftmklckdtedie