PDB entry 4jfr

View 4jfr on RCSB PDB site
Description: Crystal structure of anabolic ornithine carbamoyltransferase from Vibrio vulnificus in complex with carbamoyl phosphate
Class: transferase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious Diseases, CSGID, anabolic ornithine carbamoyltransferase, transferase, carbamoyl phospate, ornithine
Deposited on 2013-02-28, released 2013-03-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-03-13, with a file datestamp of 2013-03-08.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: 0.173
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ornithine carbamoyltransferase
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: argF, VV1_1466
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DCF5 (24-357)
      • expression tag (22-23)
    Domains in SCOPe 2.08: d4jfra1, d4jfra2, d4jfra3
  • Chain 'B':
    Compound: ornithine carbamoyltransferase
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: argF, VV1_1466
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DCF5 (24-357)
      • expression tag (18-23)
    Domains in SCOPe 2.08: d4jfrb1, d4jfrb2, d4jfrb3
  • Chain 'C':
    Compound: ornithine carbamoyltransferase
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: argF, VV1_1466
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4jfrc1, d4jfrc2
  • Heterogens: CP, CL, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jfrA (A:)
mhhhhhhssgvdlgtenlyfqsnamafnlrnrnflklldfstkeiqflidlsadlkkaky
agteqkkllgknialifekastrtrcafevaafdqgaqvtyigpsgsqigdkesmkdtar
vlgrmydgiqyrgfgqaiveelgafagvpvwngltdefhptqiladfltmlehsqgkala
diqfaylgdarnnvgnslmvgaakmgmdirlvgpqaywpdeelvaacqaiakqtggkitl
tenvaegvqgcdflytdvwvsmgespeawdervalmkpyqvnmnvlkqtgnpnvkfmhcl
pafhndettigkqvadkfgmkglevteevfesehsivfdeaenrmhtikavmvatlgs

    Sequence, based on observed residues (ATOM records): (download) 
    >4jfrA (A:)
namafnlrnrnflklldfstkeiqflidlsadlkkakyagteqkkllgknialifekast
rtrcafevaafdqgaqvtyigpsgsqigdkesmkdtarvlgrmydgiqyrgfgqaiveel
gafagvpvwngltdefhptqiladfltmlehsqgkaladiqfaylgdarnnvgnslmvga
akmgmdirlvgpqaywpdeelvaacqaiakqtggkitltenvaegvqgcdflytdvwvsm
gespeawdervalmkpyqvnmnvlkqtgnpnvkfmhclpafhndettigkqvadkfgmkg
levteevfesehsivfdeaenrmhtikavmvatlgs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4jfrB (B:)
mhhhhhhssgvdlgtenlyfqsnamafnlrnrnflklldfstkeiqflidlsadlkkaky
agteqkkllgknialifekastrtrcafevaafdqgaqvtyigpsgsqigdkesmkdtar
vlgrmydgiqyrgfgqaiveelgafagvpvwngltdefhptqiladfltmlehsqgkala
diqfaylgdarnnvgnslmvgaakmgmdirlvgpqaywpdeelvaacqaiakqtggkitl
tenvaegvqgcdflytdvwvsmgespeawdervalmkpyqvnmnvlkqtgnpnvkfmhcl
pafhndettigkqvadkfgmkglevteevfesehsivfdeaenrmhtikavmvatlgs

    Sequence, based on observed residues (ATOM records): (download) 
    >4jfrB (B:)
yfqsnamafnlrnrnflklldfstkeiqflidlsadlkkakyagteqkkllgknialife
kastrtrcafevaafdqgaqvtyigpsgsqigdkesmkdtarvlgrmydgiqyrgfgqai
veelgafagvpvwngltdefhptqiladfltmlehsqgkaladiqfaylgdarnnvgnsl
mvgaakmgmdirlvgpqaywpdeelvaacqaiakqtggkitltenvaegvqgcdflytdv
wvsmgespeawdervalmkpyqvnmnvlkqtgnpnvkfmhclpafhndettigkqvadkf
gmkglevteevfesehsivfdeaenrmhtikavmvatlgs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4jfrC (C:)
mhhhhhhssgvdlgtenlyfqsnamafnlrnrnflklldfstkeiqflidlsadlkkaky
agteqkkllgknialifekastrtrcafevaafdqgaqvtyigpsgsqigdkesmkdtar
vlgrmydgiqyrgfgqaiveelgafagvpvwngltdefhptqiladfltmlehsqgkala
diqfaylgdarnnvgnslmvgaakmgmdirlvgpqaywpdeelvaacqaiakqtggkitl
tenvaegvqgcdflytdvwvsmgespeawdervalmkpyqvnmnvlkqtgnpnvkfmhcl
pafhndettigkqvadkfgmkglevteevfesehsivfdeaenrmhtikavmvatlgs

    Sequence, based on observed residues (ATOM records): (download) 
    >4jfrC (C:)
mafnlrnrnflklldfstkeiqflidlsadlkkakyagteqkkllgknialifekastrt
rcafevaafdqgaqvtyigpsgsqigdkesmkdtarvlgrmydgiqyrgfgqaiveelga
fagvpvwngltdefhptqiladfltmlehsqgkaladiqfaylgdarnnvgnslmvgaak
mgmdirlvgpqaywpdeelvaacqaiakqtggkitltenvaegvqgcdflytdvwvsmge
speawdervalmkpyqvnmnvlkqtgnpnvkfmhclpafhndettigkqvadkfgmkgle
vteevfesehsivfdeaenrmhtikavmvatlgs