PDB entry 4je7

View 4je7 on RCSB PDB site
Description: Crystal structure of a human-like mitochondrial peptide deformylase in complex with actinonin
Class: hydrolase/hydrolase inhibitor
Keywords: peptide deformylase, mitochondrial, actinonin, HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on 2013-02-26, released 2014-02-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-03-26, with a file datestamp of 2014-03-21.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.182
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase 1A, chloroplastic/mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At1g15390, def, DEF1, F9L1.34, F9L1_34, PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9FV53 (1-189)
      • engineered mutation (46)
      • engineered mutation (111)
      • expression tag (190-193)
    Domains in SCOPe 2.08: d4je7a1, d4je7a2
  • Chain 'B':
    Compound: Peptide deformylase 1A, chloroplastic/mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: At1g15390, def, DEF1, F9L1.34, F9L1_34, PDF1A
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9FV53 (Start-189)
      • engineered mutation (46)
      • engineered mutation (111)
      • expression tag (190)
    Domains in SCOPe 2.08: d4je7b1, d4je7b2
  • Heterogens: BB2, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4je7A (A:)
mdlpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapcvglaapqigvplr
iivledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegcesvdgfraa
verylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldl
plaegcpklgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4je7A (A:)
dlpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapcvglaapqigvplri
ivledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegcesvdgfraav
erylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldlp
laegcpklgshhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4je7B (B:)
mdlpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapcvglaapqigvplr
iivledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegcesvdgfraa
verylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldl
plaegcpklgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4je7B (B:)
lpeivasgdpvlhekarevdpgeigseriqkiiddmikvmrlapcvglaapqigvplrii
vledtkeyisyapkeeilaqerrhfdlmvmvnpvlkersnkkalffegcesvdgfraave
rylevvvtgydrqgkrievnasgwqarilqhecdhldgnlyvdkmvprtfrtvdnldlpl
aegcpklgs