PDB entry 4jdg

View 4jdg on RCSB PDB site
Description: Structure of Tomato Bifunctional Nuclease TBN1, variant N211D
Class: hydrolase
Keywords: Mainly alpha helical, Trinuclear metal centre, Multi-Functional, Nuclease, 3'-Nucleotidase, Hydrolase, glycosylated, Cytosol membrane associated
Deposited on 2013-02-25, released 2014-02-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 2.74 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nuclease
    Species: Solanum lycopersicum [TaxId:4081]
    Gene: tbn1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0KFV0 (0-End)
      • engineered mutation (185)
    Domains in SCOPe 2.08: d4jdga_
  • Heterogens: ZN, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jdgA (A:)
wskeghvmtcriaqgllndeaahavkmllpeyvngdlsalcvwpdqvrhwykykwtsplh
fidtpdkacnfdyerdchdqhgvkdmcvagaiqnfttqlshyregtsdrrynmteallfl
shfmgdihqpmhvgftsdaggnsidlrwfrhksnlhhvwdreiiltaakdyyakdinlle
ediegdftdgiwsddlaswrecgnvfscvnkfatesiniackwgykgveagetlsddyfn
srlpivmkrvaqggirlamllnnvfgasqqedsvvat

    Sequence, based on observed residues (ATOM records): (download) 
    >4jdgA (A:)
wskeghvmtcriaqgllndeaahavkmllpeyvngdlsalcvwpdqvrhwykykwtsplh
fidtpdkacnfdyerdchdqhgvkdmcvagaiqnfttqlshyregtsdrrynmteallfl
shfmgdihqpmhvgftsdaggnsidlrwfrhksnlhhvwdreiiltaakdyyakdinlle
ediegdftdgiwsddlaswrecgnvfscvnkfatesiniackwgykgveagetlsddyfn
srlpivmkrvaqggirlamllnnvfg