PDB entry 4jdf

View 4jdf on RCSB PDB site
Description: Crystal structure of a PotF mutant complexed with spermidine
Class: protein binding
Keywords: Periplasmic binding protein-like II, Polyamine receptor, Spermidine binding protein, PROTEIN BINDING
Deposited on 2013-02-25, released 2013-07-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-10-01, with a file datestamp of 2014-09-26.
Experiment type: XRAY
Resolution: 1.69 Å
R-factor: 0.194
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putrescine-binding periplasmic protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b0854, JW0838, potF
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31133
      • engineered mutation (12-13)
      • engineered mutation (61)
      • engineered mutation (156)
      • engineered mutation (221)
      • engineered mutation (250)
      • engineered mutation (322)
    Domains in SCOPe 2.07: d4jdfa_
  • Heterogens: SPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jdfA (A:)
maeqktlhiynwteyiapdtvanfeketgikvvydvfdsnevlegklmagstgfdlvvps
ayflerqltagvfqpldksklpewknldpellklvakhdpdnkfampymwattgigynvd
kvkavlgenapvdswdlilkpenleklkscgvsflddpeevfatvlnylgkdpnstkadd
ytgpatdlllklrpniryfhssqyindlangdicvaigwagsvwqasnrakeakngvnvs
fsipkegamawfdvfampadaknkdeayqflnyllrpdvvahisdhvfyanankaatplv
saevrenpgiyppadvraklftqkvqdpkidrvrtrawtkvksgklehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4jdfA (A:)
qktlhiynwteyiapdtvanfeketgikvvydvfdsnevlegklmagstgfdlvvpsayf
lerqltagvfqpldksklpewknldpellklvakhdpdnkfampymwattgigynvdkvk
avlgenapvdswdlilkpenleklkscgvsflddpeevfatvlnylgkdpnstkaddytg
patdlllklrpniryfhssqyindlangdicvaigwagsvwqasnrakeakngvnvsfsi
pkegamawfdvfampadaknkdeayqflnyllrpdvvahisdhvfyanankaatplvsae
vrenpgiyppadvraklftqkvqdpkidrvrtrawtkvksg