PDB entry 4jcf

View 4jcf on RCSB PDB site
Description: S268F Variant of JC Polyomavirus Major Capsid Protein VP1 in Complex with LSTc
Class: viral protein
Keywords: beta-sandwich, jelly roll topology, viral protein, major capsid protein, PML-associated VP1 mutation, LSTc receptor motif
Deposited on 2013-02-21, released 2013-08-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (250)
    Domains in SCOPe 2.08: d4jcfa_
  • Chain 'B':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (250)
    Domains in SCOPe 2.08: d4jcfb_
  • Chain 'C':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (250)
    Domains in SCOPe 2.08: d4jcfc_
  • Chain 'D':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (250)
    Domains in SCOPe 2.08: d4jcfd_
  • Chain 'E':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (250)
    Domains in SCOPe 2.08: d4jcfe_
  • Heterogens: GOL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4jcfA (A:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgfqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jcfA (A:)
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgfqq
wrglsryfkvqlrkrrvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4jcfB (B:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgfqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jcfB (B:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvgge
alelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnen
tryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgfq
qwrglsryfkvqlrkrrvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4jcfC (C:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgfqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jcfC (C:)
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeale
lqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentry
fgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgfqqwr
glsryfkvqlrkrrvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4jcfD (D:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgfqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jcfD (D:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgfqqw
rglsryfkvqlrkrrvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4jcfE (E:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgfqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4jcfE (E:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggenvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgfqqw
rglsryfkvqlrkrrvk