PDB entry 4j5i

View 4j5i on RCSB PDB site
Description: Crystal structure of an alpha-ketoglutarate-dependent taurine dioxygenase from Mycobacterium smegmatis
Class: oxidoreductase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, TauD, oxidoreductase, iron-dependent, molecular oxygen
Deposited on 2013-02-08, released 2013-02-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-04-22, with a file datestamp of 2015-04-17.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4j5ia_
  • Chain 'B':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QZ23 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4j5ib1, d4j5ib2
  • Chain 'C':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QZ23 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4j5ic1, d4j5ic2
  • Chain 'D':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4j5id_
  • Chain 'E':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QZ23 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4j5ie1, d4j5ie2
  • Chain 'F':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4j5if_
  • Chain 'G':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4j5ig_
  • Chain 'H':
    Compound: Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
    Species: Mycobacterium smegmatis [TaxId:246196]
    Gene: MSMEG_3870
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0QZ23 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.08: d4j5ih1, d4j5ih2
  • Heterogens: FE, EDO, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4j5iA (A:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iA (A:)
qvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefae
llgtptvanswhtdvtfvdripkasllravtlpsyggttawasteaayqqlpaplrtlad
nlwavhtnrdyyevehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritr
lentvrwswkpgdlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviag
dassyspv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4j5iB (B:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iB (B:)
vqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefa
ellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlpsyggt
tawasteaayqqlpaplrtladnlwavhtnrisaeqrgyrqrfesdyyevehpvvrvhpe
tgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpgdlaiwdnratqh
yavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4j5iC (C:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iC (C:)
vqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefa
ellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlpsyggt
tawasteaayqqlpaplrtladnlwavhtnrdyyevehpvvrvhpetgervlllghfvks
fvglkdtesaalfrlfqdritrlentvrwswkpgdlaiwdnratqhyavadyddqyrrln
rvtlagdipvdvygersrviagdassyspvd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4j5iD (D:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iD (D:)
qvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefae
llgtptanswhtdvtfvdripkasllravtlpsyggttawasteaayqqlpaplrtladn
lwavhtnrdyyevehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrl
entvrwswkpgdlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviag

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4j5iE (E:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iE (E:)
vqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefa
ellgtptvanswhtdvtfvdripkasllravtlpsyggttawasteaayqqlpaplrtla
dnlwavhtnrdyyevehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdrit
rlentvrwswkpgdlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrvia
gdassyspvd

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4j5iF (F:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iF (F:)
qvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefae
llgtptanswhtdvtfvdripkasllravtlpsyggttawasteaayqqlpaplrtladn
lwavhtnrdyyevehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrl
entvrwswkpgdlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagd
assyspvdsp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4j5iG (G:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iG (G:)
qvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefae
llgtptvahptlaegaeqllpidanswhtdvtfvdripkasllravtlpsyggttawast
eaayqqlpaplrtladnlwavhtnrdyyevehpvvrvhpetgervlllghfvksfvglkd
tesaalfrlfqdritrlentvrwswkpgdlaiwdnratqhyavadyddqyrrlnrvtlag
dipvdvygersrviagdassyspv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4j5iH (H:)
gpgsmvqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddag
qlefaellgtptvahptlaegaeqllpidsrydkanswhtdvtfvdripkasllravtlp
syggttawasteaayqqlpaplrtladnlwavhtnrfdyadsaisaeqrgyrqrfesdyy
evehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritrlentvrwswkpg
dlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviagdassyspvdspv
alas

    Sequence, based on observed residues (ATOM records): (download) 
    >4j5iH (H:)
vqvtvtklgahigaridgvrvggdlspatvsainaallehkviffsgqdhlddagqlefa
ellgtptanswhtdvtfvdripkasllravtlpsyggttawasteaayqqlpaplrtlad
nlwavhtnrdyyevehpvvrvhpetgervlllghfvksfvglkdtesaalfrlfqdritr
lentvrwswkpgdlaiwdnratqhyavadyddqyrrlnrvtlagdipvdvygersrviag
dassyspvd