SCOPe 2.06: Structural Classification of Proteins

PDB entry 4iym

View 4iym on RCSB PDB site
Description: Crystal structure of putative methylmalonate-semialdehyde dehydrogenase from Sinorhizobium meliloti 1021 complexed with NAD, target 011934
Class: oxidoreductase
Keywords: structural genomics, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC, OXIDOREDUCTASE
Deposited on 2013-01-28, released 2013-04-03
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-04-03, with a file datestamp of 2013-03-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.167
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iyma_
Chain 'B':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymb_
Chain 'C':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
  - expression tag (20-22)
Domains in SCOPe 2.06: d4iymc1, d4iymc2
Chain 'D':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymd_
Chain 'E':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
  - expression tag (22)
Domains in SCOPe 2.06: d4iyme1, d4iyme2
Chain 'F':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymf_
Chain 'G':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymg_
Chain 'H':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymh_
Chain 'I':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymi_
Chain 'J':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymj_
Chain 'K':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymk_
Chain 'L':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iyml_
Chain 'M':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymm_
Chain 'N':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymn_
Chain 'O':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
  - expression tag (22)
Domains in SCOPe 2.06: d4iymo1, d4iymo2
Chain 'P':
Compound: Methylmalonate-semialdehyde dehydrogenase
Species: Sinorhizobium meliloti [TaxId:266834]
Gene: iolA, mmsA, R00726, SMc00781
Database cross-references and differences (RAF-indexed):
- Uniprot Q92RW4 (23-End)
Domains in SCOPe 2.06: d4iymp_
Heterogens: NAD, MG, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4iymA (A:)
mhhhhhhssgvdlgtenlyfqsmmyelghfidgkrvagtsgrvsnifnpatgevqgtval
asdadlaaavesakaaqpkwaatnpqrrarvfmkfvqllndnmnelaemlsrehgktidd
akgdivrglevcefvigiphlqkseftegagpgidmysirqpvgigagitpfnfpgmipm
wmfapaiacgnafilkpserdpsvpirlaelmieaglpagilnvvngdkgavdailthpd
iaavsfvgstpiaryvygtaamngkraqcfggaknhmiimpdadldqaanaligagygsa
gercmaisvavpvgeetanrlidklvpmveslrigpytdekadmgpvvtkeaeqrirsli
dsgieqgaklvvdgrdfklqgyenghfiggclfddvtpdmdiykteifgpvlsvvrarny
eealslpmkheygngvaiytrdgdaardfasrinigmvgvnvpipvplayhsfggwksss
fgdlnqhgtdsikfwtrtktitsrwpsgikdgaefsiptmr