PDB entry 4imd

View 4imd on RCSB PDB site
Description: Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase trapped with pyruvate covalently bound through a Schiff base to Lys164
Class: lyase
Keywords: Tim barrel, Schiff base, LYASE
Deposited on 2013-01-02, released 2013-11-06
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-11-06, with a file datestamp of 2013-11-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.181
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: n-acetylneuraminate lyase
    Species: Pasteurella multocida subsp. gallicida [TaxId:1169409]
    Gene: nanA, PM1715
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9CKB0 (Start-292)
      • see remark 999 (277)
  • Chain 'B':
    Compound: n-acetylneuraminate lyase
    Species: Pasteurella multocida subsp. gallicida [TaxId:1169409]
    Gene: nanA, PM1715
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9CKB0 (Start-292)
      • see remark 999 (277)
    Domains in SCOPe 2.03: d4imdb_
  • Chain 'C':
    Compound: n-acetylneuraminate lyase
    Species: Pasteurella multocida subsp. gallicida [TaxId:1169409]
    Gene: nanA, PM1715
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9CKB0 (Start-292)
      • see remark 999 (277)
  • Chain 'D':
    Compound: n-acetylneuraminate lyase
    Species: Pasteurella multocida subsp. gallicida [TaxId:1169409]
    Gene: nanA, PM1715
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9CKB0 (Start-292)
      • see remark 999 (277)
    Domains in SCOPe 2.03: d4imdd_
  • Heterogens: PO4, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4imdB (B:)
mknlkgifsallvsfnadgsinekglrqivrynidkmkvdglyvggstgenfmlsteekk
eifriakdeakdeialiaqvgsvnlqeaielgkyatelgydslsavtpfyykfsfpeikh
yydsiieatgnymivysipfltgvnigveqfgelyknpkvlgvxftagdfyllerlkkay
pnhliwagfdemmlpaaslgvdgaigstfnvngvrarqifeltqagklkealeiqhvtnd
liegilanglyltikellkldgveagycrepmtkelssekvafakelkakyls

    Sequence, based on observed residues (ATOM records): (download) 
    >4imdB (B:)
knlkgifsallvsfnadgsinekglrqivrynidkmkvdglyvggstgenfmlsteekke
ifriakdeakdeialiaqvgsvnlqeaielgkyatelgydslsavtpfyykfsfpeikhy
ydsiieatgnymivysipfltgvnigveqfgelyknpkvlgvxftagdfyllerlkkayp
nhliwagfdemmlpaaslgvdgaigstfnvngvrarqifeltqagklkealeiqhvtndl
iegilanglyltikellkldgveagycrepmtkelssekvafakelkakyls

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4imdD (D:)
mknlkgifsallvsfnadgsinekglrqivrynidkmkvdglyvggstgenfmlsteekk
eifriakdeakdeialiaqvgsvnlqeaielgkyatelgydslsavtpfyykfsfpeikh
yydsiieatgnymivysipfltgvnigveqfgelyknpkvlgvxftagdfyllerlkkay
pnhliwagfdemmlpaaslgvdgaigstfnvngvrarqifeltqagklkealeiqhvtnd
liegilanglyltikellkldgveagycrepmtkelssekvafakelkakyls

    Sequence, based on observed residues (ATOM records): (download) 
    >4imdD (D:)
knlkgifsallvsfnadgsinekglrqivrynidkmkvdglyvggstgenfmlsteekke
ifriakdeakdeialiaqvgsvnlqeaielgkyatelgydslsavtpfyykfsfpeikhy
ydsiieatgnymivysipfltgvnigveqfgelyknpkvlgvxftagdfyllerlkkayp
nhliwagfdemmlpaaslgvdgaigstfnvngvrarqifeltqagklkealeiqhvtndl
iegilanglyltikellkldgveagycrepmtkelssekvafakelkakyls