PDB entry 4ihc

View 4ihc on RCSB PDB site
Description: Crystal structure of probable mannonate dehydratase Dd703_0947 (target EFI-502222) from Dickeya dadantii Ech703
Class: isomerase
Keywords: dehydratase, magnesium binding, Structural Genomics, Enzyme Function Initiative, EFI, ISOMERASE
Deposited on 2012-12-18, released 2013-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-01-16, with a file datestamp of 2013-01-11.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.175
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihca1, d4ihca2
  • Chain 'B':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihcb1, d4ihcb2
  • Chain 'C':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihcc1, d4ihcc2
  • Chain 'D':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihcd1, d4ihcd2
  • Chain 'E':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihce1, d4ihce2
  • Chain 'F':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihcf1, d4ihcf2
  • Chain 'G':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihcg1, d4ihcg2
  • Chain 'H':
    Compound: Mandelate racemase/muconate lactonizing protein
    Species: Dickeya dadantii [TaxId:579405]
    Gene: Dd703_0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ihch1, d4ihch2
  • Heterogens: MG, GOL, FMT, IOD, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4ihcA (A:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcA (A:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggqpkrsprsktpgiyfdpeayak
    svprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlr
    mlrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvr
    tawhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkp
    glgidinetlaekypcdggipswtmartpdgtasrp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ihcB (B:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcB (B:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggpkrsprsktpgiyfdpeayaks
    vprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrm
    lrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvrt
    awhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpg
    lgidinetlaekypcdggipswtmartpdgtasrp
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4ihcC (C:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcC (C:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggpkrsprsktpgiyfdpeayaks
    vprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrm
    lrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvrt
    awhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpg
    lgidinetlaekypcdggipswtmartpdgtasrp
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4ihcD (D:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcD (D:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggpkrsprsktpgiyfdpeayaks
    vprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrm
    lrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvrt
    awhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpg
    lgidinetlaekypcdggipswtmartpdgtasrp
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4ihcE (E:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcE (E:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggpkrsprsktpgiyfdpeayaks
    vprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrm
    lrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvrt
    awhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpg
    lgidinetlaekypcdggipswtmartpdgtasrp
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4ihcF (F:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcF (F:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggpkrsprsktpgiyfdpeayaks
    vprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrm
    lrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvrt
    awhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpg
    lgidinetlaekypcdggipswtmartpdgtasrp
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >4ihcG (G:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcG (G:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggqpkrsprsktpgiyfdpeayak
    svprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlr
    mlrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvr
    tawhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkp
    glgidinetlaekypcdggipswtmartpdgtasrp
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >4ihcH (H:)
    mhhhhhhssgvdlgtenlyfqsmmsklkitnvktiltapggidlavvkvetnepglyglg
    catftqrifavksaideymapfligkdptriediwqsaavsgywrngpimnnalsgvdma
    lwdikgklagmpvyellggkcrdgiplychtdggdevevednirarmeegyqyvrcqmgm
    yggagtddlkliatqlarakniqpkrsprsktpgiyfdpeayaksvprlfehlrnklgfg
    iefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrmlrqqsstpismgelf
    vninewkplidnklidyirchvstiggitpakklavyselngvrtawhgpgdispvgvca
    nmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpglgidinetlaekypc
    dggipswtmartpdgtasrp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ihcH (H:)
    klkitnvktiltapggidlavvkvetnepglyglgcatftqrifavksaideymapflig
    kdptriediwqsaavsgywrngpimnnalsgvdmalwdikgklagmpvyellggkcrdgi
    plychtdggdevevednirarmeegyqyvrcqmgmyggpkrsprsktpgiyfdpeayaks
    vprlfehlrnklgfgiefihdvhervtpvtaiqlaktlepyqlfyledpvapenidwlrm
    lrqqsstpismgelfvninewkplidnklidyirchvstiggitpakklavyselngvrt
    awhgpgdispvgvcanmhldmsspnfgiqeytpmndalrevfpgcpeidqgyayvndkpg
    lgidinetlaekypcdggipswtmartpdgtasrp