PDB entry 4ief

View 4ief on RCSB PDB site
Description: Complex of Porphyromonas gingivalis RgpB pro- and mature domains
Class: hydrolase
Keywords: alpha/beta/alpha sandwich, cysteine endopeptidase, HYDROLASE
Deposited on 2012-12-13, released 2013-04-10
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-06-19, with a file datestamp of 2013-06-14.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.191
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Gingipain R2 Pro-Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Gingipain R2 Mature Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4iefb1, d4iefb2, d4iefb3
  • Chain 'C':
    Compound: Gingipain R2 Pro-Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Gingipain R2 Mature Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4iefd1, d4iefd2, d4iefd3
  • Chain 'E':
    Compound: Gingipain R2 Pro-Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Gingipain R2 Mature Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ieff1, d4ieff2, d4ieff3
  • Chain 'G':
    Compound: Gingipain R2 Pro-Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Gingipain R2 Mature Domain
    Species: Porphyromonas gingivalis [TaxId:242619]
    Gene: PG_0506, prtRII, rgp2, rgpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4iefh1, d4iefh2, d4iefh3
  • Heterogens: CL, BA, CA, TRS, NA, MG, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4iefB (B:)
ytpveekengrmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvk
qeyekegndltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfscesked
lktqidrtihyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygyt
kiikcydpgvtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfif
dvacvngdflynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilce
khpnnikrtfggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapa
nisasaqtfevacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgy
nkvtvikdvkveghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4iefB (B:)
grmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvkqeyekegnd
ltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfsceskedlktqidrti
hyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygytkiikcydpg
vtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfifdvacvngdf
lynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilcekhpnnikrt
fggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapanisasaqtf
evacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgynkvtvikdv
kve

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4iefD (D:)
ytpveekengrmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvk
qeyekegndltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfscesked
lktqidrtihyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygyt
kiikcydpgvtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfif
dvacvngdflynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilce
khpnnikrtfggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapa
nisasaqtfevacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgy
nkvtvikdvkveghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4iefD (D:)
ngrmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvkqeyekegn
dltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfsceskedlktqidrt
ihyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygytkiikcydp
gvtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfifdvacvngd
flynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilcekhpnnikr
tfggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapanisasaqt
fevacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgynkvtvikd
vkve

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4iefF (F:)
ytpveekengrmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvk
qeyekegndltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfscesked
lktqidrtihyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygyt
kiikcydpgvtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfif
dvacvngdflynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilce
khpnnikrtfggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapa
nisasaqtfevacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgy
nkvtvikdvkveghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4iefF (F:)
ngrmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvkqeyekegn
dltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfsceskedlktqidrt
ihyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygytkiikcydp
gvtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfifdvacvngd
flynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilcekhpnnikr
tfggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapanisasaqt
fevacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgynkvtvikd
vkve

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4iefH (H:)
ytpveekengrmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvk
qeyekegndltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfscesked
lktqidrtihyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygyt
kiikcydpgvtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfif
dvacvngdflynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilce
khpnnikrtfggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapa
nisasaqtfevacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgy
nkvtvikdvkveghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4iefH (H:)
ngrmivivpkkyeediedfvdwknqrglrtevkvaediaspvtanaiqqfvkqeyekegn
dltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfsceskedlktqidrt
ihyernittedkwlgqalciasaeggpsadngesdiqheniianlltqygytkiikcydp
gvtpkniidafnggislanytghgsetawgtshfgtthvkqltnsnqlpfifdvacvngd
flynvpcfaealmraqkdgkptgtvaiiastinqswaspmrgqdemneilcekhpnnikr
tfggvtmngmfamvekykkdgekmldtwtvfgdpsllvrtlvptkmqvtapanisasaqt
fevacdyngaiatlsddgdmvgtaivkdgkaiiklnesiadetnltltvvgynkvtvikd
vkve