PDB entry 4ibo

View 4ibo on RCSB PDB site
Description: Crystal structure of a putative gluconate dehydrogenase from agrobacterium tumefaciens (target EFI-506446)
Class: oxidoreductase
Keywords: putative gluconate dehydrogenase, enzyme function initiative, EFI, Structural Genomics, OXIDOREDUCTASE
Deposited on 2012-12-09, released 2012-12-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-12-26, with a file datestamp of 2012-12-21.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.154
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Gluconate dehydrogenase
    Species: Agrobacterium fabrum [TaxId:176299]
    Gene: Atu1407
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4iboa_
  • Chain 'B':
    Compound: Gluconate dehydrogenase
    Species: Agrobacterium fabrum [TaxId:176299]
    Gene: Atu1407
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ibob_
  • Chain 'C':
    Compound: Gluconate dehydrogenase
    Species: Agrobacterium fabrum [TaxId:176299]
    Gene: Atu1407
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4iboc_
  • Chain 'D':
    Compound: Gluconate dehydrogenase
    Species: Agrobacterium fabrum [TaxId:176299]
    Gene: Atu1407
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ibod_
  • Heterogens: MG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4iboA (A:)
hhhhhhssglvprgsmsnqiifdlggrtalvtgssrglgramaeglavagarilingtdp
srvaqtvqefrnvghdaeavafdvtseseiieafarldeqgidvdilvnnagiqfrkpmi
eletadwqrvidtnltsafmigreaakrmiprgygkivnigsltselaratvapytvakg
gikmltramaaewaqygiqanaigpgymltdmnqalidnpefdawvkartpakrwgkpqe
lvgtavflsasasdyvngqiiyvdggmlsvl

    Sequence, based on observed residues (ATOM records): (download) 
    >4iboA (A:)
nqiifdlggrtalvtgssrglgramaeglavagarilingtdpsrvaqtvqefrnvghda
eavafdvtseseiieafarldeqgidvdilvnnagiqfrkpmieletadwqrvidtnlts
afmigreaakrmiprgygkivnigsltselaratvapytvakggikmltramaaewaqyg
iqanaigpgymltdmnqalidnpefdawvkartpakrwgkpqelvgtavflsasasdyvn
gqiiyvdggmlsvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4iboB (B:)
hhhhhhssglvprgsmsnqiifdlggrtalvtgssrglgramaeglavagarilingtdp
srvaqtvqefrnvghdaeavafdvtseseiieafarldeqgidvdilvnnagiqfrkpmi
eletadwqrvidtnltsafmigreaakrmiprgygkivnigsltselaratvapytvakg
gikmltramaaewaqygiqanaigpgymltdmnqalidnpefdawvkartpakrwgkpqe
lvgtavflsasasdyvngqiiyvdggmlsvl

    Sequence, based on observed residues (ATOM records): (download) 
    >4iboB (B:)
qiifdlggrtalvtgssrglgramaeglavagarilingtdpsrvaqtvqefrnvghdae
avafdvtseseiieafarldeqgidvdilvnnagiqfrkpmieletadwqrvidtnltsa
fmigreaakrmiprgygkivnigsltselaratvapytvakggikmltramaaewaqygi
qanaigpgymltdmnqalidnpefdawvkartpakrwgkpqelvgtavflsasasdyvng
qiiyvdggmlsvl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4iboC (C:)
hhhhhhssglvprgsmsnqiifdlggrtalvtgssrglgramaeglavagarilingtdp
srvaqtvqefrnvghdaeavafdvtseseiieafarldeqgidvdilvnnagiqfrkpmi
eletadwqrvidtnltsafmigreaakrmiprgygkivnigsltselaratvapytvakg
gikmltramaaewaqygiqanaigpgymltdmnqalidnpefdawvkartpakrwgkpqe
lvgtavflsasasdyvngqiiyvdggmlsvl

    Sequence, based on observed residues (ATOM records): (download) 
    >4iboC (C:)
qiifdlggrtalvtgssrglgramaeglavagarilingtdpsrvaqtvqefrnvghdae
avafdvtseseiieafarldeqgidvdilvnnagiqfrkpmieletadwqrvidtnltsa
fmigreaakrmiprgygkivnigsltselaratvapytvakggikmltramaaewaqygi
qanaigpgymltdmnqalidnpefdawvkartpakrwgkpqelvgtavflsasasdyvng
qiiyvdggmlsvl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4iboD (D:)
hhhhhhssglvprgsmsnqiifdlggrtalvtgssrglgramaeglavagarilingtdp
srvaqtvqefrnvghdaeavafdvtseseiieafarldeqgidvdilvnnagiqfrkpmi
eletadwqrvidtnltsafmigreaakrmiprgygkivnigsltselaratvapytvakg
gikmltramaaewaqygiqanaigpgymltdmnqalidnpefdawvkartpakrwgkpqe
lvgtavflsasasdyvngqiiyvdggmlsvl

    Sequence, based on observed residues (ATOM records): (download) 
    >4iboD (D:)
msnqiifdlggrtalvtgssrglgramaeglavagarilingtdpsrvaqtvqefrnvgh
daeavafdvtseseiieafarldeqgidvdilvnnagiqfrkpmieletadwqrvidtnl
tsafmigreaakrmiprgygkivnigsltselaratvapytvakggikmltramaaewaq
ygiqanaigpgymltdmnqalidnpefdawvkartpakrwgkpqelvgtavflsasasdy
vngqiiyvdggmlsvl