PDB entry 4i4z

View 4i4z on RCSB PDB site
Description: Synechocystis sp. PCC 6803 1,4-dihydroxy-2-naphthoyl-coenzyme A synthase (MenB) in complex with salicylyl-CoA
Class: lyase
Keywords: crotonase, 1,4-dihydroxy-2-naphthoyl coenzyme A synthase, LYASE
Deposited on 2012-11-28, released 2013-05-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-06-19, with a file datestamp of 2013-06-14.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.2
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4za_
  • Chain 'B':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4zb_
  • Chain 'C':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4zc_
  • Chain 'D':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4zd_
  • Chain 'E':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4ze_
  • Chain 'F':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4zf_
  • Chain 'G':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4zg_
  • Chain 'H':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4zh_
  • Chain 'I':
    Compound: naphthoate synthase
    Species: Synechocystis sp. [TaxId:1111708]
    Gene: menB, sll1127
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4i4zi_
  • Heterogens: 2NE, BCT, MLI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zA (A:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4i4zB (B:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

    Sequence, based on observed residues (ATOM records): (download) 
    >4i4zB (B:)
dwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvllt
gagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagyai
ggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqys
aqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqelag
natllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zC (C:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zD (D:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zE (E:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zF (F:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zG (G:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zH (H:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i4zI (I:)
mdwhiakhyddilyykaggiakivinrphkrnafrpqtvfelydafcnarednrigvvll
tgagphsdgkyafcsggdqsvrgeggyiddqgtprlnvldlqrlirsmpkvvialvagya
iggghvlhlvcdltiaadnaifgqtgpkvgsfdggfgssylarivgqkkareiwylcrqy
saqeaermgmvntvvpvdrleeegiqwakeilsksplairclkaafnadcdgqaglqela
gnatllyymteegsegkqaflekrppdfsqypwlp