PDB entry 4i2v

View 4i2v on RCSB PDB site
Description: X-ray structure of the unliganded uridine phosphorylase from Yersinia pseudotuberculosis at 2.12A resolution
Class: transferase
Keywords: Rossmann Fold, Transferase, Pyrimidine metabolism
Deposited on 2012-11-23, released 2013-12-18
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-12-18, with a file datestamp of 2013-12-13.
Experiment type: XRAY
Resolution: 2.12 Å
R-factor: 0.203
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:633]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4i2va_
  • Chain 'B':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:633]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4i2vb_
  • Chain 'C':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:633]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4i2vc_
  • Chain 'D':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:633]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4i2vd_
  • Chain 'E':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:633]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4i2ve_
  • Chain 'F':
    Compound: Uridine phosphorylase
    Species: Yersinia pseudotuberculosis [TaxId:633]
    Gene: UDP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4i2vf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4i2vA (A:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4i2vA (A:)
sdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkavi
vcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslhf
apmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkgs
meewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshavk
ivveaarhll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4i2vB (B:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4i2vB (B:)
sdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkavi
vcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslhf
apmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkgs
meewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshavk
ivveaarhll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4i2vC (C:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4i2vC (C:)
sdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkavi
vcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslhf
apmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkgs
meewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshavk
ivveaarhll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4i2vD (D:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4i2vD (D:)
sdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkavi
vcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslhf
apmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkgs
meewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshavk
ivveaarhll

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4i2vE (E:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4i2vE (E:)
sdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkavi
vcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslhf
apmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkgs
meewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshavk
ivveaarhll

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4i2vF (F:)
maksdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgk
avivcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgas
lhfapmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhf
kgsmeewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkatesh
avkivveaarhll

    Sequence, based on observed residues (ATOM records): (download) 
    >4i2vF (F:)
sdvfhlgltkndlqgatlaivpgdpqrvekiaklmdnpvhlashreftswraeldgkavi
vcstgiggpstsiaveelaqlgvrtflrigttgaiqphinvgdvlvttaavrldgaslhf
apmefpavadfscttalvnaaksvgatthigitassdtfypgqerydtfsgrvvrhfkgs
meewqsmgvmnyemesatlltmcasqglragmvagvivnrtqqeipneetmkateshavk
ivveaarhll