PDB entry 4i1o
View 4i1o on RCSB PDB site
Description: Crystal structure of the Legionella pneumophila GAP domain of LepB in complex with Rab1b bound to GDP and BeF3
Class: protein transport/hydrolase
Keywords: GAP, RabGAP, hydrolase activator, Rab1b, lpg2490, GTPase-activating proteins, hydrolysis, Rab1 hydrolase, GTP hydrolase, PROTEIN TRANSPORT-HYDROLASE complex
Deposited on
2012-11-21, released
2013-01-16
The last revision prior to the SCOPe 2.04 freeze date was dated
2013-02-20, with a file datestamp of
2013-02-15.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.219
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ras-related protein Rab-1B
Species: Homo sapiens [TaxId:9606]
Gene: RAB1B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4i1oa_ - Chain 'B':
Compound: LepB
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: lepB, lpg2490
Database cross-references and differences (RAF-indexed):
- Uniprot Q5ZSM7 (Start-301)
- engineered mutation (140-141)
- engineered mutation (143)
- Chain 'C':
Compound: Ras-related protein Rab-1B
Species: Homo sapiens [TaxId:9606]
Gene: RAB1B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4i1oc_ - Chain 'D':
Compound: LepB
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: lepB, lpg2490
Database cross-references and differences (RAF-indexed):
- Uniprot Q5ZSM7 (Start-301)
- engineered mutation (140-141)
- engineered mutation (143)
- Chain 'E':
Compound: Ras-related protein Rab-1B
Species: Homo sapiens [TaxId:9606]
Gene: RAB1B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4i1oe_ - Chain 'F':
Compound: LepB
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: lepB, lpg2490
Database cross-references and differences (RAF-indexed):
- Uniprot Q5ZSM7 (Start-301)
- engineered mutation (140-141)
- engineered mutation (143)
- Chain 'G':
Compound: Ras-related protein Rab-1B
Species: Homo sapiens [TaxId:9606]
Gene: RAB1B
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4i1og_ - Chain 'H':
Compound: LepB
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: lepB, lpg2490
Database cross-references and differences (RAF-indexed):
- Uniprot Q5ZSM7 (Start-301)
- engineered mutation (140-141)
- engineered mutation (143)
- Heterogens: MG, GDP, BEF, PEG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4i1oA (A:)
ghmpeydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktikl
qiwdtagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllv
gnksdlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlf
q
Sequence, based on observed residues (ATOM records): (download)
>4i1oA (A:)
eydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktiklqiwd
tagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllvgnks
dlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlfq
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4i1oC (C:)
ghmpeydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktikl
qiwdtagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllv
gnksdlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlf
q
Sequence, based on observed residues (ATOM records): (download)
>4i1oC (C:)
eydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktiklqiwd
tagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllvgnks
dlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlfq
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4i1oE (E:)
ghmpeydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktikl
qiwdtagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllv
gnksdlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlf
q
Sequence, based on observed residues (ATOM records): (download)
>4i1oE (E:)
eydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktiklqiwd
tagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllvgnks
dlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlfq
- Chain 'F':
No sequence available.
- Chain 'G':
Sequence, based on SEQRES records: (download)
>4i1oG (G:)
ghmpeydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktikl
qiwdtagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllv
gnksdlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlf
q
Sequence, based on observed residues (ATOM records): (download)
>4i1oG (G:)
eydylfkllligdsgvgksclllrfaddtytesyistigvdfkirtieldgktiklqiwd
tagqerfrtitssyyrgahgiivvydvtdqesyanvkqwlqeidryasenvnkllvgnks
dlttkkvvdnttakefadslgipfletsaknatnveqafmtmaaeikkrmglevlfq
- Chain 'H':
No sequence available.