PDB entry 4hv8
View 4hv8 on RCSB PDB site
Description: Crystal Structure of H2Db-H155A-NPM6I
Class: immune system
Keywords: viral immunity, T cell, H2Db, influenza, viral escape, Immune system
Deposited on
2012-11-05, released
2013-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-15, with a file datestamp of
2017-11-10.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: H-2 class I histocompatibility antigen, D-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-D1
Database cross-references and differences (RAF-indexed):
- Uniprot P01899
- engineered mutation (155)
Domains in SCOPe 2.08: d4hv8a1, d4hv8a2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
- Uniprot P01887 (1-99)
- initiating methionine (0)
Domains in SCOPe 2.08: d4hv8b1, d4hv8b2 - Chain 'C':
Compound: H-2 class I histocompatibility antigen, D-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-D1
Database cross-references and differences (RAF-indexed):
- Uniprot P01899 (1-End)
- engineered mutation (155)
Domains in SCOPe 2.08: d4hv8c1, d4hv8c2 - Chain 'D':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4hv8d_ - Chain 'E':
Compound: NPM6I variant peptide
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: NPM6I variant peptide
Database cross-references and differences (RAF-indexed):
- Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4hv8A (A:)
mgphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpey
weretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfaye
grdyialnedlktwtaadmaaqitrrkweqsgaaeaykaylegecvewlhrylkngnatl
lrtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqnytcrvyheglpepltlrwepppst
Sequence, based on observed residues (ATOM records): (download)
>4hv8A (A:)
phsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywe
retqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegr
dyialnedlktwtaadmaaqitrrkweqsgaaeaykaylegecvewlhrylkngnatllr
tdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtf
qkwasvvvplgkeqnytcrvyheglpepltlrwepp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4hv8B (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4hv8C (C:)
mgphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpey
weretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfaye
grdyialnedlktwtaadmaaqitrrkweqsgaaeaykaylegecvewlhrylkngnatl
lrtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqnytcrvyheglpepltlrwepppst
Sequence, based on observed residues (ATOM records): (download)
>4hv8C (C:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaeaykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrweppp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4hv8D (D:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>4hv8D (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.