PDB entry 4han

View 4han on RCSB PDB site
Description: Crystal structure of Galectin 8 with NDP52 peptide
Class: sugar binding protein
Keywords: Autophagy, innate immunity, carbohydrate recognition domain (CRD), autophagy adapter molecule, NAD binding, NDP52 peoptide binding, Cytosol, SUGAR BINDING PROTEIN
Deposited on 2012-09-27, released 2013-03-20
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-05-15, with a file datestamp of 2013-05-10.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.193
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214 (2-156)
      • expression tag (0-1)
      • conflict (57)
    • Uniprot O00214 (159-292)
      • linker (157-158)
    Domains in SCOPe 2.05: d4hana1, d4hana2
  • Chain 'B':
    Compound: Galectin-8
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O00214 (2-156)
      • expression tag (0-1)
      • conflict (57)
    • Uniprot O00214 (159-292)
      • linker (157-158)
    Domains in SCOPe 2.05: d4hanb1, d4hanb2
  • Chain 'C':
    Compound: Calcium-binding and coiled-coil domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: CALCOCO2, NDP52
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Calcium-binding and coiled-coil domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: CALCOCO2, NDP52
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAD, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4hanA (A:)
    gsmmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkp
    radvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvav
    ngkhtllyghrigpekidtlgiygkvnihsigfsfsshmrlpfaarlntpmgpgrtvvvk
    gevnanaksfnvdllagkskdialhlnprlnikafvrnsflqeswgeeernitsfpfspg
    myfemiiycdvrefkvavngvhsleykhrfkelssidtleingdihllevrsw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4hanB (B:)
    gsmmlslnnlqniiynpvipfvgtipdqldpgtlivirghvpsdadrfqvdlqngssvkp
    radvafhfnprfkragcivcntlinekwgreeitydtpfkreksfeivimvlkdkfqvav
    ngkhtllyghrigpekidtlgiygkvnihsigfsfsshmrlpfaarlntpmgpgrtvvvk
    gevnanaksfnvdllagkskdialhlnprlnikafvrnsflqeswgeeernitsfpfspg
    myfemiiycdvrefkvavngvhsleykhrfkelssidtleingdihllevrsw
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.