PDB entry 4h5p

View 4h5p on RCSB PDB site
Description: Crystal Structure of Rift Valley Fever Virus Nucleocapsid Protein Tetramer Bound to Single-stranded RNA
Class: viral protein/RNA
Keywords: nucleocapsid protein, N protein, ribonucleoprotein, viral nucleoprotein, RNA binding, virus, RNP, VIRAL PROTEIN-RNA complex
Deposited on 2012-09-18, released 2012-11-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-12-05, with a file datestamp of 2012-11-30.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.182
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleocapsid protein
    Species: Rift Valley fever virus [TaxId:11588]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4h5pa_
  • Chain 'B':
    Compound: nucleocapsid protein
    Species: Rift Valley fever virus [TaxId:11588]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4h5pb_
  • Chain 'C':
    Compound: nucleocapsid protein
    Species: Rift Valley fever virus [TaxId:11588]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4h5pc_
  • Chain 'D':
    Compound: nucleocapsid protein
    Species: Rift Valley fever virus [TaxId:11588]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4h5pd_
  • Chain 'E':
    Compound: 28-mer poly(U) RNA
  • Chain 'F':
    Compound: 28-mer poly(U) RNA
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4h5pA (A:)
mdnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivl
altrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalv
vlsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvi
npnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqa
yktaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4h5pA (A:)
dnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivla
ltrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalvv
lsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvin
pnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqay
ktaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4h5pB (B:)
mdnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivl
altrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalv
vlsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvi
npnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqa
yktaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4h5pB (B:)
dnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivla
ltrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalvv
lsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvin
pnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqay
ktaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4h5pC (C:)
mdnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivl
altrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalv
vlsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvi
npnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqa
yktaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4h5pC (C:)
dnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivla
ltrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalvv
lsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvin
pnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqay
ktaa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4h5pD (D:)
mdnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivl
altrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalv
vlsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvi
npnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqa
yktaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4h5pD (D:)
dnyqelaiqfaaqavdrneieqwvrefayqgfdarrviellkqyggadwekdakkmivla
ltrgnkprrmmmkmskegkatvealinkyklkegnpsrdeltlsrvaaalagrtcqalvv
lsewlpvtgttmdglspayprhmmhpsfagmvdpslpgdylraildahslyllqfsrvin
pnlrgrtkeevaatftqpmnaavnsnfishekrreflkafglvdsngkpsaavmaaaqay
ktaa

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.