PDB entry 4h2y

View 4h2y on RCSB PDB site
Description: Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and ATP
Class: ligase
Keywords: Ligase, ATP binding, glycine binding, carrier protein, aminoacyl-tRNA synthetase, seryl-tRNA synthetase
Deposited on 2012-09-13, released 2013-03-06
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-05-29, with a file datestamp of 2013-05-24.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.178
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Amino acid--[acyl-carrier-protein] ligase 1
  Species: Bradyrhizobium japonicum [TaxId:224911]
  Gene: bll0957
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q89VT8 (Start-239)
  • Uniprot Q7CWR3 (240-250)
  • Uniprot Q89VT8 (251-End)
• Chain 'B':
  Compound: Amino acid--[acyl-carrier-protein] ligase 1
  Species: Bradyrhizobium japonicum [TaxId:224911]
  Gene: bll0957
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q89VT8 (Start-239)
  • Uniprot Q7CWR3 (240-250)
  • Uniprot Q89VT8 (251-End)
• Chain 'C':
  Compound: Aminoacyl carrier protein
  Species: Agrobacterium tumefaciens [TaxId:176299]
  Gene: AGR_C_4658, Atu2571
  Database cross-references and differences (RAF-indexed):
  • Uniprot A9CHM9 (20-End)
    • expression tag (19)
  Domains in SCOPe 2.03: d4h2yc_
• Chain 'D':
  Compound: Aminoacyl carrier protein
  Species: Agrobacterium tumefaciens [TaxId:176299]
  Gene: AGR_C_4658, Atu2571
  Database cross-references and differences (RAF-indexed):
  • Uniprot A9CHM9
  Domains in SCOPe 2.03: d4h2yd_
• Heterogens: ZN, ATP, MG, PNS, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  Sequence, based on SEQRES records: (download)
  

  >4h2yC (C:)
  mgsshhhhhhssglvprgshmnatireilakfgqlptpvdtiadeadlyaaglssfasvq
  lmlgieeafdiefpdnllnrksfasikaiedtvklildgkeaa
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >4h2yC (C:)
  hmnatireilakfgqlptpvdtiadeadlyaaglssfasvqlmlgieeafdiefpdnlln
  rksfasikaiedtvkli
  

  
  
• Chain 'D':
  Sequence, based on SEQRES records: (download)
  

  >4h2yD (D:)
  mgsshhhhhhssglvprgshmnatireilakfgqlptpvdtiadeadlyaaglssfasvq
  lmlgieeafdiefpdnllnrksfasikaiedtvklildgkeaa
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >4h2yD (D:)
  natireilakfgqlplyaaglssfasvqlmlgieeafdiefpdnllnrksfasikaiedt
  vkl