PDB entry 4gpf
View 4gpf on RCSB PDB site
Description: Structure of the Fe3+-biliverdin-HmuO, heme oxygenase from Corynebacterium diphtheriae (data set III)
Class: Oxidoreductase
Keywords: helix, heme degradation, heme, Oxidoreductase
Deposited on
2012-08-20, released
2013-08-21
The last revision prior to the SCOPe 2.06 freeze date was dated
2013-08-21, with a file datestamp of
2013-08-16.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.19
AEROSPACI score: 0.5
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Heme oxygenase
Species: Corynebacterium diphtheriae [TaxId:1717]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4gpfa_ - Chain 'B':
Compound: Heme oxygenase
Species: Corynebacterium diphtheriae [TaxId:1717]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4gpfb_ - Chain 'C':
Compound: Heme oxygenase
Species: Corynebacterium diphtheriae [TaxId:1717]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4gpfc_ - Heterogens: BLA, FE, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4gpfA (A:)
mttataglavelkqstaqahekaehstfmsdllkgrlgvaeftrlqeqawlfytaleqav
davrasgfaeslldpalnraevlardldklngssewrsritaspavidyvnrleeirdnv
dgpalvahhyvrylgdlsggqviarmmqrhygvdpealgfyhfegiaklkvykdeyrekl
nnlelsdeqrehllkeatdafvfnhqvfadlgkgl
Sequence, based on observed residues (ATOM records): (download)
>4gpfA (A:)
glavelkqstaqahekaehstfmsdllkgrlgvaeftrlqeqawlfytaleqavdavras
gfaeslldpalnraevlardldklngssewrsritaspavidyvnrleeirdnvdgpalv
ahhyvrylgdlsggqviarmmqrhygvdpealgfyhfegiaklkvykdeyreklnnlels
deqrehllkeatdafvfnhqvfadlgk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4gpfB (B:)
mttataglavelkqstaqahekaehstfmsdllkgrlgvaeftrlqeqawlfytaleqav
davrasgfaeslldpalnraevlardldklngssewrsritaspavidyvnrleeirdnv
dgpalvahhyvrylgdlsggqviarmmqrhygvdpealgfyhfegiaklkvykdeyrekl
nnlelsdeqrehllkeatdafvfnhqvfadlgkgl
Sequence, based on observed residues (ATOM records): (download)
>4gpfB (B:)
glavelkqstaqahekaehstfmsdllkgrlgvaeftrlqeqawlfytaleqavdavras
gfaeslldpalnraevlardldklngssewrsritaspavidyvnrleeirdnvdgpalv
ahhyvrylgdlsggqviarmmqrhygvdpealgfyhfegiaklkvykdeyreklnnlels
deqrehllkeatdafvfnhqvfadlgkgl
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4gpfC (C:)
mttataglavelkqstaqahekaehstfmsdllkgrlgvaeftrlqeqawlfytaleqav
davrasgfaeslldpalnraevlardldklngssewrsritaspavidyvnrleeirdnv
dgpalvahhyvrylgdlsggqviarmmqrhygvdpealgfyhfegiaklkvykdeyrekl
nnlelsdeqrehllkeatdafvfnhqvfadlgkgl
Sequence, based on observed residues (ATOM records): (download)
>4gpfC (C:)
aglavelkqstaqahekaehstfmsdllkgrlgvaeftrlqeqawlfytaleqavdavra
sgfaeslldpalnraevlardldklngssewrsritaspavidyvnrleeirdnvdgpal
vahhyvrylgdlsggqviarmmqrhygvdpealgfyhfegiaklkvykdeyreklnnlel
sdeqrehllkeatdafvfnhqvfadlgk