SCOPe 2.08: Structural Classification of Proteins

PDB entry 4gms

View 4gms on RCSB PDB site
Description: Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin
Class: viral protein/immune system
Keywords: immunoglobulin, virus attachment and entry, immune recognition, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2012-08-16, released 2012-10-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus [TaxId:392809]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot P03435 (1-End)
  - expression tag (0)
Domains in SCOPe 2.08: d4gmsa1, d4gmsa2
Chain 'B':
Compound: Hemagglutinin HA2 chain
Species: Influenza A virus [TaxId:392809]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot P03435 (0-End)
Domains in SCOPe 2.08: d4gmsb_
Chain 'C':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus [TaxId:392809]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot P03435 (1-End)
  - expression tag (0)
Domains in SCOPe 2.08: d4gmsc1, d4gmsc2
Chain 'D':
Compound: Hemagglutinin HA2 chain
Species: Influenza A virus [TaxId:392809]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot P03435 (0-End)
Domains in SCOPe 2.08: d4gmsd_
Chain 'E':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus [TaxId:392809]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot P03435 (1-End)
  - expression tag (0)
Domains in SCOPe 2.08: d4gmse1, d4gmse2
Chain 'F':
Compound: Hemagglutinin HA2 chain
Species: Influenza A virus [TaxId:392809]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Uniprot P03435 (0-End)
Domains in SCOPe 2.08: d4gmsf_
Chain 'H':
Compound: Fab S139/1 heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 4GMS (0-End)
Domains in SCOPe 2.08: d4gmsh_
Chain 'I':
Compound: Fab S139/1 heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 4GMS (0-End)
Domains in SCOPe 2.08: d4gmsi_
Chain 'J':
Compound: Fab S139/1 heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 4GMS (0-End)
Domains in SCOPe 2.08: d4gmsj_
Chain 'L':
Compound: Fab S139/1 light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 4GMS (0-End)
Domains in SCOPe 2.08: d4gmsl1, d4gmsl2
Chain 'M':
Compound: Fab S139/1 light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 4GMS (0-End)
Domains in SCOPe 2.08: d4gmsm1
Chain 'N':
Compound: Fab S139/1 light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 4GMS (0-End)
Domains in SCOPe 2.08: d4gmsn1, d4gmsn2
Heterogens: NAG, SO4, GOL, PG4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4gmsA (A:)
gatlclghhavpngtlvktitndqievtnatelvqssstgkicnnphrildginctlida
llgdphcdgfqnekwdlfverskafsncypydvpdyaslrslvassgtlefinegfnwtg
vtqnggssackrgpdsgffsrlnwlyksgstypvqnvtmpnndnsdklyiwgvhhpstdk
eqtnlyvqasgkvtvstkrsqqtiipnvgsrpwvrglssrisiywtivkpgdilvinsng
nliaprgyfkmrtgkssimrsdapigtcssecitpngsipndkpfqnvnkitygacpkyv
kqntlklatgmrnvpekqtr