PDB entry 4ghh

View 4ghh on RCSB PDB site
Description: Structure of Homoprotocatechuate 2,3-Dioxygenase from B.fuscum in complex with 4-Nitrocatechol at 1.55 Ang resolution
Class: oxidoreductase
Keywords: Dioxygenase, oxygen activation, Fe(II), 2-His-1-carboxylate facial triad, homoprotocatechuate, 4-nitrocatechol, oxy complex, oxidoreductase
Deposited on 2012-08-07, released 2012-10-31
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-12-12, with a file datestamp of 2012-12-07.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.125
AEROSPACI score: 0.67 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: homoprotocatechuate 2,3-dioxygenase
    Species: Brevibacterium fuscum [TaxId:47914]
    Gene: hpcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ghha1, d4ghha2
  • Chain 'B':
    Compound: homoprotocatechuate 2,3-dioxygenase
    Species: Brevibacterium fuscum [TaxId:47914]
    Gene: hpcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ghhb1, d4ghhb2
  • Chain 'C':
    Compound: homoprotocatechuate 2,3-dioxygenase
    Species: Brevibacterium fuscum [TaxId:47914]
    Gene: hpcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ghhc1, d4ghhc2
  • Chain 'D':
    Compound: homoprotocatechuate 2,3-dioxygenase
    Species: Brevibacterium fuscum [TaxId:47914]
    Gene: hpcd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ghhd1, d4ghhd2
  • Heterogens: FE2, P6G, CL, CA, PG4, 4NC, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ghhA (A:)
msneipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefi
hhnlvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrved
plgfpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvted
iqddegttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdr
iergpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpv
vpswyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqaskgfk
lgnql

    Sequence, based on observed residues (ATOM records): (download) 
    >4ghhA (A:)
neipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefihh
nlvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrvedpl
gfpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvtediq
ddegttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdrie
rgpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpvvp
swyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqaskg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ghhB (B:)
msneipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefi
hhnlvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrved
plgfpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvted
iqddegttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdr
iergpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpv
vpswyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqaskgfk
lgnql

    Sequence, based on observed residues (ATOM records): (download) 
    >4ghhB (B:)
neipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefihh
nlvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrvedpl
gfpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvtediq
ddegttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdrie
rgpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpvvp
swyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqaskgfklg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ghhC (C:)
msneipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefi
hhnlvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrved
plgfpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvted
iqddegttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdr
iergpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpv
vpswyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqaskgfk
lgnql

    Sequence, based on observed residues (ATOM records): (download) 
    >4ghhC (C:)
neipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefihh
nlvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrvedpl
gfpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvtediq
ddegttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdrie
rgpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpvvp
swyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqask

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ghhD (D:)
msneipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefi
hhnlvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrved
plgfpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvted
iqddegttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdr
iergpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpv
vpswyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqaskgfk
lgnql

    Sequence, based on observed residues (ATOM records): (download) 
    >4ghhD (D:)
eipkpvapapdilrcayaelvvtdlaksrnfyvdvlglhvsyedenqiylrsfeefihhn
lvltkgpvaalkamafrvrtpedvdkaeayyqelgcrterrkdgfvkgigdalrvedplg
fpyefffetthverlhmrydlysagelvrldhfnqvtpdvprgrkyledlgfrvtediqd
degttyaawmhrkgtvhdtaltggngprlhhvafsthekhniiqicdkmgalrisdrier
gpgrhgvsnafylyildpdnhrieiytqdyytgdpdnptitwnvhdnqrrdwwgnpvvps
wyteaskvldldgnvqeiiertddselevtigadgfsftragdedgsyhgqaskgfklg