PDB entry 4ggf

View 4ggf on RCSB PDB site
Description: Crystal structure of Mn2+ bound calprotectin
Class: antimicrobial protein
Keywords: S100, EF-hand, ANTIMICROBIAL PROTEIN
Deposited on 2012-08-06, released 2013-02-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-03-27, with a file datestamp of 2013-03-22.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.178
AEROSPACI score: 0.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein S100-A8
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A8, CAGA, CFAG, MRP8
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05109 (0-End)
      • conflict (41)
    Domains in SCOPe 2.07: d4ggfa_
  • Chain 'C':
    Compound: Protein S100-A9
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A9, CAGB, CFAG, MRP14
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ggfc_
  • Chain 'K':
    Compound: Protein S100-A8
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A8, CAGA, CFAG, MRP8
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05109 (0-End)
      • conflict (41)
    Domains in SCOPe 2.07: d4ggfk_
  • Chain 'L':
    Compound: Protein S100-A9
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A9, CAGB, CFAG, MRP14
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ggfl_
  • Chain 'S':
    Compound: Protein S100-A8
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A8, CAGA, CFAG, MRP8
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05109 (0-End)
      • conflict (41)
    Domains in SCOPe 2.07: d4ggfs_
  • Chain 'T':
    Compound: Protein S100-A9
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A9, CAGB, CFAG, MRP14
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ggft_
  • Chain 'U':
    Compound: Protein S100-A8
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A8, CAGA, CFAG, MRP8
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05109 (0-End)
      • conflict (41)
    Domains in SCOPe 2.07: d4ggfu_
  • Chain 'V':
    Compound: Protein S100-A9
    Species: Homo sapiens [TaxId:9606]
    Gene: S100A9, CAGB, CFAG, MRP14
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ggfv_
  • Heterogens: CA, MN, GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ggfA (A:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkksheeshke

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfA (A:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkkshee

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ggfC (C:)
mtskmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekvie
himedldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglgegtp

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfC (C:)
kmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekviehim
edldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglge

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4ggfK (K:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkksheeshke

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfK (K:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkkshee

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4ggfL (L:)
mtskmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekvie
himedldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglgegtp

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfL (L:)
kmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekviehim
edldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglgeg

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >4ggfS (S:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkksheeshke

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfS (S:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkkshee

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >4ggfT (T:)
mtskmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekvie
himedldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglgegtp

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfT (T:)
kmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekviehim
edldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglgeg

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >4ggfU (U:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkksheeshke

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfU (U:)
mltelekalnsiidvyhkyslikgnfhavyrddlkklletespqyirkkgadvwfkeldi
ntdgavnfqeflilvikmgvaahkksh

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >4ggfV (V:)
mtskmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekvie
himedldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglgegtp

    Sequence, based on observed residues (ATOM records): (download) 
    >4ggfV (V:)
kmsqlernietiintfhqysvklghpdtlnqgefkelvrkdlqnflkkenknekviehim
edldtnadkqlsfeefimlmarltwashekmhegdegpghhhkpglgeg