PDB entry 4g88

View 4g88 on RCSB PDB site
Description: Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii
Class: peptide binding protein
Keywords: OmpA-like domain, PEPTIDE BINDING PROTEIN
Deposited on 2012-07-22, released 2013-07-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (1-3)
    Domains in SCOPe 2.08: d4g88a1, d4g88a2
  • Chain 'B':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (1-3)
    Domains in SCOPe 2.08: d4g88b1, d4g88b2
  • Chain 'C':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (3)
    Domains in SCOPe 2.08: d4g88c1, d4g88c2
  • Chain 'D':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (0-3)
    Domains in SCOPe 2.08: d4g88d1, d4g88d2
  • Chain 'E':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (3)
    Domains in SCOPe 2.08: d4g88e1, d4g88e2
  • Chain 'F':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (1-3)
    Domains in SCOPe 2.08: d4g88f1, d4g88f2
  • Chain 'G':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (0-3)
    Domains in SCOPe 2.08: d4g88g1, d4g88g2
  • Chain 'H':
    Compound: Outer membrane protein omp38
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: omp38, ompA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6RYW5 (4-122)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d4g88h1, d4g88h2
  • Heterogens: API, SRT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4g88A (A:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4g88A (A:)
shmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgprk
lnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatitg
sr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4g88B (B:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4g88B (B:)
shmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgprk
lnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatitg
sr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4g88C (C:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4g88C (C:)
meltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgprkln
erlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatitgsr

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4g88D (D:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4g88E (E:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4g88E (E:)
meltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgprkln
erlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatitgsr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4g88F (F:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4g88F (F:)
shmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgprk
lnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatitg
sr

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4g88G (G:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4g88H (H:)
gshmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgpr
klnerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatit
gsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4g88H (H:)
hmeltedlnmelrvffdtnksnikdqykpeiakvaeklseypnatarieghtdntgprkl
nerlslaransvksalvneynvdasrlstqgfawdqpiadnktkegramnrrvfatitgs
r