PDB entry 4g3m

View 4g3m on RCSB PDB site
Description: Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis
Class: hydrolase, oxidoreductase
Keywords: alpha/beta/alpha, deaminase domain, reductase domain, HYDROLASE, OXIDOREDUCTASE
Deposited on 2012-07-15, released 2013-02-20
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-02-20, with a file datestamp of 2013-02-15.
Experiment type: XRAY
Resolution: 2.56 Å
R-factor: 0.222
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Riboflavin biosynthesis protein ribD
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: BSU23280, ribD, ribG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17618 (12-End)
      • expression tag (11)
    Domains in SCOPe 2.05: d4g3ma1, d4g3ma2
  • Chain 'B':
    Compound: Riboflavin biosynthesis protein ribD
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: BSU23280, ribD, ribG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17618 (12-End)
      • expression tag (10-11)
    Domains in SCOPe 2.05: d4g3mb1, d4g3mb2
  • Chain 'C':
    Compound: Riboflavin biosynthesis protein ribD
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: BSU23280, ribD, ribG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17618 (12-End)
      • expression tag (10-11)
    Domains in SCOPe 2.05: d4g3mc1, d4g3mc2
  • Chain 'D':
    Compound: Riboflavin biosynthesis protein ribD
    Species: BACILLUS SUBTILIS [TaxId:224308]
    Gene: BSU23280, ribD, ribG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17618 (12-End)
      • expression tag (10-11)
    Domains in SCOPe 2.05: d4g3md1, d4g3md2
  • Heterogens: ZN, AI9, AOF, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4g3mA (A:)
mrgshhhhhhgsmeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygea
haevhaihmagahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvag
rgismmkeagievregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdsk
witseaarqdaqqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsiped
akvicdqiaptwifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvy
veggsavhgsfvkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqi
grdikltakptke

    Sequence, based on observed residues (ATOM records): (download) 
    >4g3mA (A:)
smeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygeahaevhaihmag
ahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvagrgismmkeagi
evregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdskwitseaarqda
qqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsipedakvicdqiapt
wifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvyveggsavhgsf
vkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqigrdikltakpt
k

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4g3mB (B:)
mrgshhhhhhgsmeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygea
haevhaihmagahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvag
rgismmkeagievregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdsk
witseaarqdaqqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsiped
akvicdqiaptwifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvy
veggsavhgsfvkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqi
grdikltakptke

    Sequence, based on observed residues (ATOM records): (download) 
    >4g3mB (B:)
gsmeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygeahaevhaihma
gahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvagrgismmkeag
ievregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdskwitseaarqd
aqqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsipedakvicdqiap
twifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvyveggsavhgs
fvkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqigrdikltakp
t

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4g3mC (C:)
mrgshhhhhhgsmeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygea
haevhaihmagahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvag
rgismmkeagievregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdsk
witseaarqdaqqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsiped
akvicdqiaptwifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvy
veggsavhgsfvkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqi
grdikltakptke

    Sequence, based on observed residues (ATOM records): (download) 
    >4g3mC (C:)
gsmeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygeahaevhaihma
gahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvagrgismmkeag
ievregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdskwitseaarqd
aqqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsipedakvicdqiap
twifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvyveggsavhgs
fvkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqigrdikltakp
t

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4g3mD (D:)
mrgshhhhhhgsmeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygea
haevhaihmagahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvag
rgismmkeagievregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdsk
witseaarqdaqqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsiped
akvicdqiaptwifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvy
veggsavhgsfvkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqi
grdikltakptke

    Sequence, based on observed residues (ATOM records): (download) 
    >4g3mD (D:)
gsmeeyymklaldlakqgegqtesnplvgavvvkdgqivgmgahlkygeahaevhaihma
gahaegadiyvtlepcshygktppcaeliinsgikrvfvamrdpnplvagrgismmkeag
ievregiladqaerlnekflhfmrtglpyvtlkaaasldgkiatstgdskwitseaarqd
aqqyrkthqsilvgvgtvkadnpsltcrlpnvtkqpvrvildtvlsipedakvicdqiap
twifttaradeekkkrlsafgvniftleteriqipdvlkilaeegimsvyveggsavhgs
fvkegcfqeiifyfapkliggthapslisgegfqsmkdvpllqftditqigrdikltakp
t