PDB entry 4fqi
View 4fqi on RCSB PDB site
Description: Crystal Structure of Fab CR9114 in Complex with a H5N1 influenza virus hemagglutinin
Class: viral protein/immune system
Keywords: neutralizing antibodies, antibody affinity, antigens, epitopes, glycosylation, hemagglutinin glycoproteins, immunoglobulin Fab fragments, H5N1 subtype, influenza vaccines, avian flu, envelope protein, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on
2012-06-25, released
2012-08-22
The last revision prior to the SCOPe 2.03 freeze date was dated
2012-10-03, with a file datestamp of
2012-09-28.
Experiment type: XRAY
Resolution: 1.71 Å
R-factor: 0.2
AEROSPACI score: 0.53
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hemagglutinin HA1
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4fqia_ - Chain 'B':
Compound: hemagglutinin HA2
Species: Influenza A virus [TaxId:284218]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Antibody CR9114 heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Antibody CR9114 light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d4fqil1, d4fqil2 - Heterogens: EDO, NAG, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4fqiA (A:)
adpgdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcs
vagwllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqi
ipksswssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlw
gihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpn
dainfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihp
ltigecpkyvksnrlvlatglrnspqrerrrkkr
Sequence, based on observed residues (ATOM records): (download)
>4fqiA (A:)
dpgdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsv
agwllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqii
pksswssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlwg
ihhpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvngqsgrmeffwtilkpnd
ainfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpl
tigecpkyvksnrlvlatglrnsp
- Chain 'B':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>4fqiL (L:)
qsaltqppavsgtpgqrvtiscsgsdsnigrrsvnwyqqfpgtapklliysndqrpsvvp
drfsgsksgtsaslaisglqsedeaeyycaawddslkgavfgggtqltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>4fqiL (L:)
saltqppavsgtpgqrvtiscsgsdsnigrrsvnwyqqfpgtapklliysndqrpsvvpd
rfsgsksgtsaslaisglqsedeaeyycaawddslkgavfgggtqltvlgqpkaapsvtl
fppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassy
lsltpeqwkshrsyscqvthegstvektvap