PDB entry 4fl4

View 4fl4 on RCSB PDB site
Description: Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome
Class: protein binding
Keywords: Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, cohesin, dockerin, X module, cell surface, hydrolase, PROTEIN BINDING
Deposited on 2012-06-14, released 2012-06-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-08-22, with a file datestamp of 2012-08-17.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.193
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoside hydrolase family 9
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: Cther_2220
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1NID1 (22-87)
      • expression tag (20-21)
    Domains in SCOPe 2.07: d4fl4a1, d4fl4a2
  • Chain 'B':
    Compound: scaffolding dockerin binding protein a
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: SdbA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4fl4b_
  • Chain 'C':
    Compound: Cellulosome anchoring protein cohesin region
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: ClothDRAFT_2952
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Glycoside hydrolase family 9
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: Cther_2220
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1NID1 (22-End)
      • expression tag (21)
    Domains in SCOPe 2.07: d4fl4d1, d4fl4d2
  • Chain 'E':
    Compound: scaffolding dockerin binding protein a
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: SdbA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4fl4e_
  • Chain 'F':
    Compound: Cellulosome anchoring protein cohesin region
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: ClothDRAFT_2952
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Glycoside hydrolase family 9
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: Cther_2220
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1NID1 (22-End)
      • expression tag (20-21)
    Domains in SCOPe 2.07: d4fl4g1, d4fl4g2
  • Chain 'H':
    Compound: scaffolding dockerin binding protein a
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: SdbA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4fl4h_
  • Chain 'I':
    Compound: Cellulosome anchoring protein cohesin region
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: ClothDRAFT_2952
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Glycoside hydrolase family 9
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: Cther_2220
    Database cross-references and differences (RAF-indexed):
    • Uniprot D1NID1 (22-End)
      • expression tag (20-21)
    Domains in SCOPe 2.07: d4fl4j1, d4fl4j2
  • Chain 'K':
    Compound: scaffolding dockerin binding protein a
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: SdbA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4fl4k_
  • Chain 'L':
    Compound: Cellulosome anchoring protein cohesin region
    Species: Clostridium thermocellum [TaxId:1515]
    Gene: ClothDRAFT_2952
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4fl4A (A:)
mghhhhhhhhhhssghiegrhmgdvnddgkvnstdltllkryvlkavstlpsskaeknad
vnrdgrvnssdvtilsrylirvieklpi

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4A (A:)
hmgdvnddgkvnstdltllkryvlkavstlpsskaeknadvnrdgrvnssdvtilsryli
rvieklpi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4fl4B (B:)
mrgshhhhhhtdlradkassielkfdrnkgevgdiligtvrinniknfagfqvnivydpk
vlmavdpetgkeftsstfppgrtvlknnaygpiqiadndpekgilnfalaysyiagyket
gvaeesgiiakigfkilqkkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvl
slgdepf

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4B (B:)
assielkfdrnkgevgdiligtvrinniknfagfqvnivydpkvlmavdpetgkeftsst
fppgrtvlknnaygpiqiadndpekgilnfalaysyiagyketgvaeesgiiakigfkil
qkkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvlsl

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4fl4D (D:)
mghhhhhhhhhhssghiegrhmgdvnddgkvnstdltllkryvlkavstlpsskaeknad
vnrdgrvnssdvtilsrylirvieklpi

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4D (D:)
mgdvnddgkvnstdltllkryvlkavstlpsskaeknadvnrdgrvnssdvtilsrylir
viekl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4fl4E (E:)
mrgshhhhhhtdlradkassielkfdrnkgevgdiligtvrinniknfagfqvnivydpk
vlmavdpetgkeftsstfppgrtvlknnaygpiqiadndpekgilnfalaysyiagyket
gvaeesgiiakigfkilqkkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvl
slgdepf

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4E (E:)
assielkfdrnkgevgdiligtvrinniknfagfqvnivydpkvlmavdpetgkeftsst
fppgrtvlknnaygpiqiadndpekgilnfalaysyiagyketgvaeesgiiakigfkil
qkkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvlsl

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4fl4G (G:)
mghhhhhhhhhhssghiegrhmgdvnddgkvnstdltllkryvlkavstlpsskaeknad
vnrdgrvnssdvtilsrylirvieklpi

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4G (G:)
hmgdvnddgkvnstdltllkryvlkavstlpsskaeknadvnrdgrvnssdvtilsryli
rvieklp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4fl4H (H:)
mrgshhhhhhtdlradkassielkfdrnkgevgdiligtvrinniknfagfqvnivydpk
vlmavdpetgkeftsstfppgrtvlknnaygpiqiadndpekgilnfalaysyiagyket
gvaeesgiiakigfkilqkkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvl
slgdepf

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4H (H:)
assielkfdrnkgevgdiligtvrinniknfagfqvnivydpkvlmavdpetgkeftsst
fppgrtvlknnaygpiqiadndpekgilnfalaysyiagyketgvaeesgiiakigfkil
qkkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvlsl

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4fl4J (J:)
mghhhhhhhhhhssghiegrhmgdvnddgkvnstdltllkryvlkavstlpsskaeknad
vnrdgrvnssdvtilsrylirvieklpi

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4J (J:)
hmgdvnddgkvnstdltllkryvlkavstlpsskaeknadvnrdgrvnssdvtilsryli
rviekl

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4fl4K (K:)
mrgshhhhhhtdlradkassielkfdrnkgevgdiligtvrinniknfagfqvnivydpk
vlmavdpetgkeftsstfppgrtvlknnaygpiqiadndpekgilnfalaysyiagyket
gvaeesgiiakigfkilqkkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvl
slgdepf

    Sequence, based on observed residues (ATOM records): (download) 
    >4fl4K (K:)
assielkfdrkgevgdiligtvrinniknfagfqvnivydpkvlmavdpetgkeftsstf
ppgrtvlknnaygpiqiadndpekgilnfalaysyiagyketgvaeesgiiakigfkilq
kkstavkfqdtlsmpgaisgtqlfdwdgevitgyeviqpdvlsl

  • Chain 'L':
    No sequence available.