PDB entry 4fky

View 4fky on RCSB PDB site
Description: Crystal structure of nucleoside diphosphate kinase B from Trypanosoma brucei bound to GTP
Class: transferase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, African trypanosomiasis, African sleeping sickness, NTP biosynthesis, NDP, TRANSFERASE
Deposited on 2012-06-13, released 2012-06-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-06-27, with a file datestamp of 2012-06-22.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.149
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Trypanosoma brucei brucei [TaxId:999953]
    Gene: Tb11.01.7800
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4fkya_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Trypanosoma brucei brucei [TaxId:999953]
    Gene: Tb11.01.7800
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4fkyb_
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Trypanosoma brucei brucei [TaxId:999953]
    Gene: Tb11.01.7800
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4fkyc_
  • Heterogens: GDP, MG, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4fkyA (A:)
mahhhhhhmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyi
dlaskpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvg
rnvchgsdsvesakreiafwfkaeelvswtshsvkqiyera

    Sequence, based on observed residues (ATOM records): (download) 
    >4fkyA (A:)
mpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfy
sglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsd
svesakreiafwfkaeelvswtshsvkqiyer

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4fkyB (B:)
mahhhhhhmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyi
dlaskpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvg
rnvchgsdsvesakreiafwfkaeelvswtshsvkqiyera

    Sequence, based on observed residues (ATOM records): (download) 
    >4fkyB (B:)
mpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfy
sglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsd
svesakreiafwfkaeelvswtshsvkqiyer

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4fkyC (C:)
mahhhhhhmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyi
dlaskpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvg
rnvchgsdsvesakreiafwfkaeelvswtshsvkqiyera

    Sequence, based on observed residues (ATOM records): (download) 
    >4fkyC (C:)
mpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfy
sglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsd
svesakreiafwfkaeelvswtshsvkqiyera