PDB entry 4fkx
View 4fkx on RCSB PDB site
Description: Crystal structure of nucleoside diphosphate kinase B from Trypanosoma brucei bound to CDP
Class: transferase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, NTP biosynthesis, NDP, African trypanosomiasis, African sleeping sickness, TRANSFERASE
Deposited on
2012-06-13, released
2012-06-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2012-06-27, with a file datestamp of
2012-06-22.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.154
AEROSPACI score: 0.6
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Trypanosoma brucei brucei [TaxId:999953]
Gene: Tb11.01.7800
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4fkxa_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Trypanosoma brucei brucei [TaxId:999953]
Gene: Tb11.01.7800
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4fkxb_ - Chain 'C':
Compound: Nucleoside diphosphate kinase
Species: Trypanosoma brucei brucei [TaxId:999953]
Gene: Tb11.01.7800
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4fkxc_ - Heterogens: CDP, MG, MPD, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4fkxA (A:)
mahhhhhhmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyi
dlaskpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvg
rnvchgsdsvesakreiafwfkaeelvswtshsvkqiyera
Sequence, based on observed residues (ATOM records): (download)
>4fkxA (A:)
mpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfy
sglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsd
svesakreiafwfkaeelvswtshsvkqiyera
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4fkxB (B:)
mahhhhhhmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyi
dlaskpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvg
rnvchgsdsvesakreiafwfkaeelvswtshsvkqiyera
Sequence, based on observed residues (ATOM records): (download)
>4fkxB (B:)
psertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfys
glvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsds
vesakreiafwfkaeelvswtshsvkqiyera
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4fkxC (C:)
mahhhhhhmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyi
dlaskpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvg
rnvchgsdsvesakreiafwfkaeelvswtshsvkqiyera
Sequence, based on observed residues (ATOM records): (download)
>4fkxC (C:)
mpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfy
sglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsd
svesakreiafwfkaeelvswtshsvkqiyera