PDB entry 4fjv

View 4fjv on RCSB PDB site
Description: Crystal Structure of Human Otubain2 and Ubiquitin Complex
Class: hydrolase
Keywords: Ubiquitin, otubain, NEDD8,cleavage specificity, deubiquitylation, cysteine protease, HYDROLASE
Deposited on 2012-06-12, released 2013-06-12
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-06-12, with a file datestamp of 2013-06-07.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.209
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin thioesterase OTUB2
    Species: Homo sapiens [TaxId:9606]
    Gene: OTUB2, C14orf137, OTB2, OTU2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4fjva_
  • Chain 'B':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (10-End)
      • expression tag (3-9)
    Domains in SCOPe 2.04: d4fjvb_
  • Chain 'C':
    Compound: Ubiquitin thioesterase OTUB2
    Species: Homo sapiens [TaxId:9606]
    Gene: OTUB2, C14orf137, OTB2, OTU2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4fjvc_
  • Chain 'D':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (10-End)
      • expression tag (3-9)
    Domains in SCOPe 2.04: d4fjvd_
  • Heterogens: GOL, NEH, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4fjvA (A:)
gshmsetsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralg
ysylesllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvss
llkvfndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdh
iqitalsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaadkh

    Sequence, based on observed residues (ATOM records): (download) 
    >4fjvA (A:)
setsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralgysyl
esllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvssllkv
fndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdhiqit
alsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaad

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4fjvB (B:)
ypydvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkql
edgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >4fjvB (B:)
dvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4fjvC (C:)
gshmsetsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralg
ysylesllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvss
llkvfndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdh
iqitalsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaadkh

    Sequence, based on observed residues (ATOM records): (download) 
    >4fjvC (C:)
etsfnlisekcdilsilrdhpenriyrrkieelskrftairktkgdgncfyralgysyle
sllgksreifkfkervlqtpndllaagfeehkfrnffnafysvvelvekdgsvssllkvf
ndqsasdhivqflrlltsafirnradffrhfideemdikdfcthevepmatecdhiqita
lsqalsialqveyvdemdtalnhhvfpeaatpsvyllyktshynilyaad

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4fjvD (D:)
ypydvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkql
edgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >4fjvD (D:)
dvpdyahmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledg
rtlsdyniqkestlhlvlrlrg