PDB entry 4ffv

View 4ffv on RCSB PDB site
Description: Crystal Structure of Dipeptidyl Peptidase IV (DPP4, DPP-IV, CD26) in Complex with 11A19 Fab
Class: HYDROLASE/Immune System, INHIBITOR
Keywords: hydrolase, HYDROLASE-Immune System, INHIBITOR complex
Deposited on 2012-06-01, released 2012-12-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-12-12, with a file datestamp of 2012-12-07.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.272
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dipeptidyl peptidase 4
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Dpp4, Cd26
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ffva1, d4ffva2
  • Chain 'B':
    Compound: dipeptidyl peptidase 4
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Dpp4, Cd26
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ffvb1, d4ffvb2
  • Chain 'C':
    Compound: 11A19 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4FFV (0-209)
    Domains in SCOPe 2.06: d4ffvc1, d4ffvc2
  • Chain 'D':
    Compound: 11A19 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4FFV (0-216)
  • Chain 'H':
    Compound: 11A19 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4FFV (0-216)
  • Chain 'L':
    Compound: 11A19 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4FFV (0-209)
    Domains in SCOPe 2.06: d4ffvl1, d4ffvl2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ffvA (A:)
rrtytladylkntfrvksyslrwvsdseylykqennillfnaehgnssiflenstfeifg
dsisdysvspdrlfvlleynyvkqwrhsytasysiydlnkrqliteekipnntqwitwsq
eghklayvwkndiyvkiephlpshritstgkenvifngindwvyeeeifgaysalwwspn
gtflayaqfndtgvplieysfysdeslqypktvwipypkagavnptvkffivntdslsst
tttipmqitapasvttgdhylcdvawvsedrislqwlrriqnysvmaicdydkttlvwnc
pttqehietsatgwcgrfrpaephftsdgssfykivsdkdgykhicqfqkdrkpeqvctf
itkgawevisiealtsdylyyisneykempggrnlykiqltdhtnkkclscdlnpercqy
ysvslskeakyyqlgcrgpglplytlhrstdqkelrvlednsaldkmlqdvqmpskkldf
ivlnetrfwyqmilpphfdkskkypllidvyagpcsqkadaafrlnwatylasteniiva
sfdgrgsgyqgdkimhainkrlgtlevedqieaarqflkmgfvdskrvaiwgwsyggyvt
smvlgsgsgvfkcgiavapvsrweyydsvyterymglptpednldhyrnstvmsraenfk
qveyllihgtaddnvhfqqsaqiskalvdagvdfqamwytdedhgiasstahqhiyshms
hflqqcfslr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ffvA (A:)
rtytladylkntfrvksyslrwvsdseylykqennillfnaehgnssiflenstfeifgd
sisdysvspdrlfvlleynyvkqwrhsytasysiydlnkrqliteekipnntqwitwsqe
ghklayvwkndiyvkiephlpshritstgkenvifngindwvyeeeifgaysalwwspng
tflayaqfndtgvplieysfysdeslqypktvwipypkagavnptvkffivntdslsstt
ttipmqitapasvttgdhylcdvawvsedrislqwlrriqnysvmaicdydkttlvwncp
ttqehietsatgwcgrfrpaephftsdgssfykivsdkdgykhicqfqkdrkpeqvctfi
tkgawevisiealtsdylyyisneykempggrnlykiqltdhtnkkclscdlnpercqyy
svslskeakyyqlgcrgpglplytlhrstdqkelrvlednsaldkmlqdvqmpskkldfi
vlnetrfwyqmilpphfdkskkypllidvyagpcsqkadaafrlnwatylasteniivas
fdgrgsgyqgdkimhainkrlgtlevedqieaarqflkmgfvdskrvaiwgwsyggyvts
mvlgsgsgvfkcgiavapvsrweyydsvyterymglptpednldhyrnstvmsraenfkq
veyllihgtaddnvhfqqsaqiskalvdagvdfqamwytdedhgiasstahqhiyshmsh
flqqcfs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ffvB (B:)
rrtytladylkntfrvksyslrwvsdseylykqennillfnaehgnssiflenstfeifg
dsisdysvspdrlfvlleynyvkqwrhsytasysiydlnkrqliteekipnntqwitwsq
eghklayvwkndiyvkiephlpshritstgkenvifngindwvyeeeifgaysalwwspn
gtflayaqfndtgvplieysfysdeslqypktvwipypkagavnptvkffivntdslsst
tttipmqitapasvttgdhylcdvawvsedrislqwlrriqnysvmaicdydkttlvwnc
pttqehietsatgwcgrfrpaephftsdgssfykivsdkdgykhicqfqkdrkpeqvctf
itkgawevisiealtsdylyyisneykempggrnlykiqltdhtnkkclscdlnpercqy
ysvslskeakyyqlgcrgpglplytlhrstdqkelrvlednsaldkmlqdvqmpskkldf
ivlnetrfwyqmilpphfdkskkypllidvyagpcsqkadaafrlnwatylasteniiva
sfdgrgsgyqgdkimhainkrlgtlevedqieaarqflkmgfvdskrvaiwgwsyggyvt
smvlgsgsgvfkcgiavapvsrweyydsvyterymglptpednldhyrnstvmsraenfk
qveyllihgtaddnvhfqqsaqiskalvdagvdfqamwytdedhgiasstahqhiyshms
hflqqcfslr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ffvB (B:)
rtytladylkntfrvksyslrwvsdseylykqennillfnaehgnssiflenstfeifgd
sisdysvspdrlfvlleynyvkqwrhsytasysiydlnkrqliteekipnntqwitwsqe
ghklayvwkndiyvkiephlpshritstgkenvifngindwvyeeeifgaysalwwspng
tflayaqfndtgvplieysfysdeslqypktvwipypkagavnptvkffivntdslsstt
ttipmqitapasvttgdhylcdvawvsedrislqwlrriqnysvmaicdydkttlvwncp
ttqehietsatgwcgrfrpaephftsdgssfykivsdkdgykhicqfqkdrkpeqvctfi
tkgawevisiealtsdylyyisneykempggrnlykiqltdhtnkkclscdlnpercqyy
svslskeakyyqlgcrgpglplytlhrstdqkelrvlednsaldkmlqdvqmpskkldfi
vlnetrfwyqmilpphfdkskkypllidvyagpcsqkadaafrlnwatylasteniivas
fdgrgsgyqgdkimhainkrlgtlevedqieaarqflkmgfvdskrvaiwgwsyggyvts
mvlgsgsgvfkcgiavapvsrweyydsvyterymglptpednldhyrnstvmsraenfkq
veyllihgtaddnvhfqqsaqiskalvdagvdfqamwytdedhgiasstahqhiyshmsh
flqqcfslr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ffvC (C:)
qivlsqspailsaspgekvtmtcrasssvnnmhwyqqkpgsspkpwlhgtsnlasgvpvr
fsgsgsgtsfsltisrveaedaatyfcqqwsnhpptfgggtkleidradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ffvC (C:)
qivlsqspailsaspgekvtmtcrasssvnnmhwyqqkpgsspkpwlhgtsnlasgvpvr
fsgsgsgtsfsltisrveaedaatyfcqqwsnhpptfgggtkleidradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgsegvlnswtdqdskdstysmsstltltkd
eyerhnsytceathktstspivksfnr

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4ffvL (L:)
qivlsqspailsaspgekvtmtcrasssvnnmhwyqqkpgsspkpwlhgtsnlasgvpvr
fsgsgsgtsfsltisrveaedaatyfcqqwsnhpptfgggtkleidradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ffvL (L:)
qivlsqspailsaspgekvtmtcrasssvnnmhwyqqkpgsspkpwlhgtsnlasgvpvr
fsgsgsgtsfsltisrveaedaatyfcqqwsnhpptfgggtkleidradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgsegvlnswtdqdskdstysmsstltltkd
eyerhnsytceathktstspivksfnr