PDB entry 4ffc

View 4ffc on RCSB PDB site
Description: Crystal structure of a 4-aminobutyrate aminotransferase (GabT) from Mycobacterium abscessus
Class: transferase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, Mycobacterium, GabT, pyridoxal phosphate binding, aminotransferase, TRANSFERASE
Deposited on 2012-05-31, released 2012-06-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-04-15, with a file datestamp of 2015-04-10.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-aminobutyrate aminotransferase (GabT)
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4207
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MIQ9
      • conflict (107)
    Domains in SCOPe 2.08: d4ffca_
  • Chain 'B':
    Compound: 4-aminobutyrate aminotransferase (GabT)
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4207
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MIQ9
      • conflict (107)
    Domains in SCOPe 2.08: d4ffcb_
  • Chain 'C':
    Compound: 4-aminobutyrate aminotransferase (GabT)
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4207
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MIQ9
      • conflict (107)
    Domains in SCOPe 2.08: d4ffcc_
  • Chain 'D':
    Compound: 4-aminobutyrate aminotransferase (GabT)
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_4207
    Database cross-references and differences (RAF-indexed):
    • Uniprot B1MIQ9
      • conflict (107)
    Domains in SCOPe 2.08: d4ffcd_
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4ffcA (A:)
    gpgsmtdityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivd
    adgnsfidlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnalt
    pgdhdkrtalfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyks
    qfgpfapevyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggf
    ivpapgflatltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggm
    plsavtgraelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsr
    lsalaeevdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgn
    virllpplvigddlldegitalsdiirakashq
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ffcA (A:)
    dityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivdadgnsf
    idlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnaltpgdhdk
    rtalfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyksqfgpfa
    pevyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggfivpapg
    flatltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggmplsavt
    graelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsrlsalae
    evdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgnvirllp
    plvigddlldegitalsdiiraka
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ffcB (B:)
    gpgsmtdityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivd
    adgnsfidlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnalt
    pgdhdkrtalfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyks
    qfgpfapevyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggf
    ivpapgflatltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggm
    plsavtgraelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsr
    lsalaeevdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgn
    virllpplvigddlldegitalsdiirakashq
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ffcB (B:)
    ityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivdadgnsfi
    dlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnaltpgdhdkr
    talfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyksqfgpfap
    evyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggfivpapgf
    latltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggmplsavtg
    raelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsrlsalaee
    vdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgnvirllpp
    lvigddlldegitalsdiiraka
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4ffcC (C:)
    gpgsmtdityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivd
    adgnsfidlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnalt
    pgdhdkrtalfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyks
    qfgpfapevyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggf
    ivpapgflatltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggm
    plsavtgraelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsr
    lsalaeevdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgn
    virllpplvigddlldegitalsdiirakashq
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ffcC (C:)
    ityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivdadgnsfi
    dlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnaltpgdhdkr
    talfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyksqfgpfap
    evyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggfivpapgf
    latltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggmplsavtg
    raelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsrlsalaee
    vdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgnvirllpp
    lvigddlldegitalsdiirakas
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4ffcD (D:)
    gpgsmtdityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivd
    adgnsfidlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnalt
    pgdhdkrtalfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyks
    qfgpfapevyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggf
    ivpapgflatltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggm
    plsavtgraelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsr
    lsalaeevdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgn
    virllpplvigddlldegitalsdiirakashq
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ffcD (D:)
    ityrlaqkrtivtplpgprsgalaerrraavsagvgstapvyavdadggvivdadgnsfi
    dlgagiavttvgashpavaaaiadqathfthtcfmvtpyeqyvqvaellnaltpgdhdkr
    talfnsgaeavenaikvarlatgrpavvafdnayhgrtnltmaltaksmpyksqfgpfap
    evyrmpasyplrdepgltgeeaarraisrietqigaqslaaiiiepiqgeggfivpapgf
    latltawasengvvfiadevqtgfartgawfasehegivpdivtmakgiaggmplsavtg
    raelmdavyagglggtyggnpvtcaaavaalgvmreldlpararaieasvtsrlsalaee
    vdiigevrgrgamlaieivkpgtlepdaaltksiaaealsqgvliltcgtfgnvirllpp
    lvigddlldegitalsdiiraka