PDB entry 4f7c
View 4f7c on RCSB PDB site
Description: Crystal structure of bovine CD1d with bound C12-di-sulfatide
Class: immune system
Keywords: protein-glycolipid complex, MHC-fold, Ig-fold, antigen presentation, TCR, membrane, IMMUNE SYSTEM
Deposited on
2012-05-15, released
2012-11-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.86 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: CD1D antigen, d polypeptide
Species: Bos taurus [TaxId:9913]
Gene: CD1D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4f7ca1, d4f7ca2, d4f7ca3 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Bos taurus [TaxId:9913]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4f7cb_ - Chain 'C':
Compound: CD1D antigen, d polypeptide
Species: Bos taurus [TaxId:9913]
Gene: CD1D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4f7cc1, d4f7cc2, d4f7cc3 - Chain 'D':
Compound: Beta-2-microglobulin
Species: Bos taurus [TaxId:9913]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4f7cd_ - Heterogens: 0SG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4f7cA (A:)
spapqtpfsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsd
qqweqlqhtllvyrssftrdiwefveklhveypleiqiatgcellprnisesflraafqg
rdvlsfqgmswvsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkse
lekqvkpeawlssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnad
stwylrvtldvaagevaglscqvkhsslgdqdiilywhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4f7cA (A:)
pfsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsdqqweql
qhtllvyrssftrdiwefveklhveypleiqiatgcellsesflraafqgrdvlsfqgms
wvsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkselekqvkpeaw
lssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnadstwylrvtld
vaagevaglscqvkhsslgdqdiilywhh
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4f7cB (B:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl
Sequence, based on observed residues (ATOM records): (download)
>4f7cB (B:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrd
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4f7cC (C:)
spapqtpfsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsd
qqweqlqhtllvyrssftrdiwefveklhveypleiqiatgcellprnisesflraafqg
rdvlsfqgmswvsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkse
lekqvkpeawlssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnad
stwylrvtldvaagevaglscqvkhsslgdqdiilywhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>4f7cC (C:)
fsfqglqissfanrswtrtdglawlgelqpytwrnesdtirflkpwsrgtfsdqqweqlq
htllvyrssftrdiwefveklhveypleiqiatgcellsesflraafqgrdvlsfqgmsw
vsapdappfiqevikvlnqnqgtketvhwllhdiwpelvrgvlqtgkselekqvkpeawl
ssgpspgpgrlllvchvsgfypkpvrvmwmrgeqeepgtrqgdvmpnadstwylrvtldv
aglscqvkhsslgdqdiilywhh
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4f7cD (D:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl
Sequence, based on observed residues (ATOM records): (download)
>4f7cD (D:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrd