SCOPe 2.08: Structural Classification of Proteins

PDB entry 4f58

View 4f58 on RCSB PDB site
Description: Fab structure of a neutralizing antibody L3 from an early subtype A HIV-1 infected patient
Class: immune system
Keywords: Ig, antibody, gp120, IMMUNE SYSTEM
Deposited on 2012-05-12, released 2013-03-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-03-27, with a file datestamp of 2013-03-22.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.21
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

Chain 'H':
Compound: Heavy chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-225)
Domains in SCOPe 2.08: d4f58h_
Chain 'I':
Compound: Heavy chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-225)
Domains in SCOPe 2.08: d4f58i_
Chain 'J':
Compound: Heavy chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-225)
Domains in SCOPe 2.08: d4f58j_
Chain 'K':
Compound: Heavy chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-225)
Domains in SCOPe 2.08: d4f58k_
Chain 'L':
Compound: Light chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-212)
Domains in SCOPe 2.08: d4f58l1, d4f58l2
Chain 'M':
Compound: Light chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-212)
Domains in SCOPe 2.08: d4f58m1, d4f58m2
Chain 'N':
Compound: Light chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-212)
Domains in SCOPe 2.08: d4f58n1, d4f58n2
Chain 'O':
Compound: Light chain of Fab of a neutralizing antibody L3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 4F58 (0-212)
Domains in SCOPe 2.08: d4f58o1, d4f58o2
Heterogens: SO4, HOH

PDB Chain Sequences:

Chain 'H':
Sequence, based on SEQRES records: (download)

>4f58H (H:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Sequence, based on observed residues (ATOM records): (download)

>4f58H (H:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Chain 'I':
Sequence, based on SEQRES records: (download)

>4f58I (I:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Sequence, based on observed residues (ATOM records): (download)

>4f58I (I:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Chain 'J':
Sequence, based on SEQRES records: (download)

>4f58J (J:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Sequence, based on observed residues (ATOM records): (download)

>4f58J (J:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Chain 'K':
Sequence, based on SEQRES records: (download)

>4f58K (K:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Sequence, based on observed residues (ATOM records): (download)

>4f58K (K:)
evqlvesgggvvqpggslrlscvasgfsfsdfgmnwvrqapgkglewvafvpfdrrinyy
aesvrgrftisrddskntvflqmdslrpedtaiyycakhrsqwnfwpreggldhwgqgtl
vtvssastkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)

>4f58L (L:)
qsaltqpasvsgspgqsitisctgttsdvgtynfvswyqqhpgkapkaiifdvtnrpsgi
snrfsgskfgntasltisglqaedeadyycaaytvastllfgggtkvtvlrqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvapt

Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)

>4f58M (M:)
qsaltqpasvsgspgqsitisctgttsdvgtynfvswyqqhpgkapkaiifdvtnrpsgi
snrfsgskfgntasltisglqaedeadyycaaytvastllfgggtkvtvlrqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvapt

Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)

>4f58N (N:)
qsaltqpasvsgspgqsitisctgttsdvgtynfvswyqqhpgkapkaiifdvtnrpsgi
snrfsgskfgntasltisglqaedeadyycaaytvastllfgggtkvtvlrqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvapt

Chain 'O':
Sequence; same for both SEQRES and ATOM records: (download)

>4f58O (O:)
qsaltqpasvsgspgqsitisctgttsdvgtynfvswyqqhpgkapkaiifdvtnrpsgi
snrfsgskfgntasltisglqaedeadyycaaytvastllfgggtkvtvlrqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvapt