PDB entry 4f4a

View 4f4a on RCSB PDB site
Description: Crystal structure of Nucleoside diphosphate kinase B from Trypanosoma brucei, UDP-bound form
Class: transferase
Keywords: SSGCID, NIH, NIAID, SBRI, Emerald BioStructures, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on 2012-05-10, released 2012-05-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-05-30, with a file datestamp of 2012-05-25.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.16
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Trypanosoma brucei brucei [TaxId:999953]
    Gene: Tb11.01.7800
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4f4aa_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Trypanosoma brucei brucei [TaxId:999953]
    Gene: Tb11.01.7800
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4f4ab_
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Trypanosoma brucei brucei [TaxId:999953]
    Gene: Tb11.01.7800
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4f4ac_
  • Heterogens: UDP, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4f4aA (A:)
gpgsmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlas
kpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvc
hgsdsvesakreiafwfkaeelvswtshsvkqiyera

    Sequence, based on observed residues (ATOM records): (download) 
    >4f4aA (A:)
psertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfys
glvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsds
vesakreiafwfkaeelvswtshsvkqiye

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4f4aB (B:)
gpgsmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlas
kpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvc
hgsdsvesakreiafwfkaeelvswtshsvkqiyera

    Sequence, based on observed residues (ATOM records): (download) 
    >4f4aB (B:)
psertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfys
glvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsds
vesakreiafwfkaeelvswtshsvkqiye

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4f4aC (C:)
gpgsmpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlas
kpfysglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvc
hgsdsvesakreiafwfkaeelvswtshsvkqiyera

    Sequence, based on observed residues (ATOM records): (download) 
    >4f4aC (C:)
mpsertfiavkpdgvqrnlvgeiikrfenkgyklvglkllqpteeqakqhyidlaskpfy
sglvsyfssgpivgmvweglgvvkggrvllgatnpadslpgtirgdfavdvgrnvchgsd
svesakreiafwfkaeelvswtshsvkqiyer