PDB entry 4eo4

View 4eo4 on RCSB PDB site
Description: Crystal structure of the yeast mitochondrial threonyl-tRNA synthetase (MST1) in complex with seryl sulfamoyl adenylate
Class: ligase
Keywords: aminoacyl-tRNA synthetase class II, threonyl-tRNA synthetase, threonine tRNA, mitochondria, ligase
Deposited on 2012-04-13, released 2012-07-11
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-01-02, with a file datestamp of 2012-12-28.
Experiment type: XRAY
Resolution: 2.87 Å
R-factor: 0.178
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Threonine--tRNA ligase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: MST1, YKL194C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4eo4a1, d4eo4a2
  • Chain 'B':
    Compound: Threonine--tRNA ligase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: MST1, YKL194C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4eo4b1, d4eo4b2
  • Chain 'C':
    Compound: Threonine--tRNA ligase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: MST1, YKL194C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4eo4c1, d4eo4c2
  • Chain 'D':
    Compound: Threonine--tRNA ligase, mitochondrial
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: MST1, YKL194C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4eo4d1, d4eo4d2
  • Heterogens: SSA, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4eo4A (A:)
mgsshhhhhhssglvprgshmasatknassatpatmtsmvsqrqdlfmtdplspgsmffl
pngakifnkliefmklqqkfkfgfnevvtpliykktlweksghwenyaddmfkvettdee
keeyglkpmncpghclifgkkdrsynelplrfsdfsplhrneasgalsgltrlrkfhqdd
ghifctpsqvkseifnslklidivynkifpfvkggsgaesnyfinfstrpdhfigdlkvw
nhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkthqvatiqldfqlperfd
lkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwlnpyqaviipvntknvqq
ldmctalqkklrneleaddmepvplndwhfnvdldirnepvgyriksailknysyliivg
deevqlqkynirerdnrksfekltmsqiwekfieleknyk

    Sequence, based on observed residues (ATOM records): (download) 
    >4eo4A (A:)
atmtsmvsqrqdlfmtdplspgsmfflpngakifnkliefmklqqkfkfgfnevvtpliy
kktlweksghwenyaddmfkvetkeeyglkpmncpghclifgkkdrsynelplrfsdfsp
lhrneasgalsgltrlrkfhqddghifctpsqvkseifnslklidivynkifpfaesnyf
infstrpdhfigdlkvwnhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkt
hqvatiqldfqlperfdlkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwl
npyqaviipvntknvqqldmctalqkklrneleaddmepvplndwhfnvdldirnepvgy
riksailknysyliivgdeevqlqkynirerdnrksfekltmsqiwekfieleknyk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4eo4B (B:)
mgsshhhhhhssglvprgshmasatknassatpatmtsmvsqrqdlfmtdplspgsmffl
pngakifnkliefmklqqkfkfgfnevvtpliykktlweksghwenyaddmfkvettdee
keeyglkpmncpghclifgkkdrsynelplrfsdfsplhrneasgalsgltrlrkfhqdd
ghifctpsqvkseifnslklidivynkifpfvkggsgaesnyfinfstrpdhfigdlkvw
nhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkthqvatiqldfqlperfd
lkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwlnpyqaviipvntknvqq
ldmctalqkklrneleaddmepvplndwhfnvdldirnepvgyriksailknysyliivg
deevqlqkynirerdnrksfekltmsqiwekfieleknyk

    Sequence, based on observed residues (ATOM records): (download) 
    >4eo4B (B:)
mtsmvsqrqdlfmtdplspgsmfflpngakifnkliefmklqqkfkfgfnevvtpliykk
tlweksghwenyaddmfkvetkeeyglkpmncpghclifgkkdrsynelplrfsdfsplh
rneasgalsgltrlrkfhqddghifctpsqvkseifnslklidivynkifpfsnyfinfs
trpdhfigdlkvwnhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkthqva
tiqldfqlperfdlkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwlnpyq
aviipvntknvqqldmctalqkklrneleaddmepvplndwhfnvdldirnepvgyriks
ailknysyliivgdeevqlqkynirerdnrksfekltmsqiwekfieleknyk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4eo4C (C:)
mgsshhhhhhssglvprgshmasatknassatpatmtsmvsqrqdlfmtdplspgsmffl
pngakifnkliefmklqqkfkfgfnevvtpliykktlweksghwenyaddmfkvettdee
keeyglkpmncpghclifgkkdrsynelplrfsdfsplhrneasgalsgltrlrkfhqdd
ghifctpsqvkseifnslklidivynkifpfvkggsgaesnyfinfstrpdhfigdlkvw
nhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkthqvatiqldfqlperfd
lkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwlnpyqaviipvntknvqq
ldmctalqkklrneleaddmepvplndwhfnvdldirnepvgyriksailknysyliivg
deevqlqkynirerdnrksfekltmsqiwekfieleknyk

    Sequence, based on observed residues (ATOM records): (download) 
    >4eo4C (C:)
atmtsmvsqrqdlfmtdplspgsmfflpngakifnkliefmklqqkfkfgfnevvtpliy
kktlweksghwenyaddmfkvettekeeyglkpmncpghclifgkkdrsynelplrfsdf
splhrneasgalsgltrlrkfhqddghifctpsqvkseifnslklidivynkifpsnyfi
nfstrpdhfigdlkvwnhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkth
qvatiqldfqlperfdlkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwln
pyqaviipvntknvqqldmctalqkklrneleaddmepvplndwhfnvdldirnepvgyr
iksailknysyliivgdeevqlqkynirerdnrksfekltmsqiwekfieleknyk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4eo4D (D:)
mgsshhhhhhssglvprgshmasatknassatpatmtsmvsqrqdlfmtdplspgsmffl
pngakifnkliefmklqqkfkfgfnevvtpliykktlweksghwenyaddmfkvettdee
keeyglkpmncpghclifgkkdrsynelplrfsdfsplhrneasgalsgltrlrkfhqdd
ghifctpsqvkseifnslklidivynkifpfvkggsgaesnyfinfstrpdhfigdlkvw
nhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkthqvatiqldfqlperfd
lkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwlnpyqaviipvntknvqq
ldmctalqkklrneleaddmepvplndwhfnvdldirnepvgyriksailknysyliivg
deevqlqkynirerdnrksfekltmsqiwekfieleknyk

    Sequence, based on observed residues (ATOM records): (download) 
    >4eo4D (D:)
atmtsmvsqrqdlfmtdplspgsmfflpngakifnkliefmklqqkfkfgfnevvtpliy
kktlweksghwenyaddmfkvetkeeyglkpmncpghclifgkkdrsynelplrfsdfsp
lhrneasgalsgltrlrkfhqddghifctpsqvkseifnslklidivynkifpsnyfinf
strpdhfigdlkvwnhaeqvlkeileesgkpwklnpgdgafygpkldimvtdhlrkthqv
atiqldfqlperfdlkfkdqdnsykrpimihratfgsierfmallidsnegrwpfwlnpy
qaviipvntknvqqldmctalqkklrneleaddmepvplndwhfnvdldirnepvgyrik
sailknysyliivgdeevqlqkynirerdnrksfekltmsqiwekfieleknyk