PDB entry 4edb

View 4edb on RCSB PDB site
Description: Structures of monomeric hemagglutinin and its complex with an Fab fragment of a neutralizing antibody that binds to H1 subtype influenza viruses: molecular basis of infectivity of 2009 pandemic H1N1 influenza A viruses
Class: viral protein
Keywords: influenza virus, haemagglutinin, conformation, antibody, VIRAL PROTEIN
Deposited on 2012-03-27, released 2013-05-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:457457]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4edba_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:457457]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4edbb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:457457]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4edbc_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:457457]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4edbd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:457457]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4edbe_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:457457]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4edbf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4edbA (A:)
adpgdticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncs
vagwilgnpecelliskeswsyivekpnpengtcypghfadyeelreqlssvssferfem
fpkesswpnhtvtgvsascshngkssfyknllwltgknglypnlsksyannkekevlvlw
gvhhppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepg
dtiifeangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhp
vtigecpkyvrsaklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4edbA (A:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncsvagw
ilgnpecelliskeswsyivekpnpengtcypghfadyeelreqlssvssferfemfpke
sswpnhtvtgvsascshngkssfyknllwltgknglypnlsksyannkekevlvlwgvhh
ppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepgdtii
feangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhpvtig
ecpkyvrsaklrmvtglrnipsi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4edbB (B:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydypkyseesklnrekidgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4edbB (B:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydyp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4edbC (C:)
adpgdticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncs
vagwilgnpecelliskeswsyivekpnpengtcypghfadyeelreqlssvssferfem
fpkesswpnhtvtgvsascshngkssfyknllwltgknglypnlsksyannkekevlvlw
gvhhppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepg
dtiifeangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhp
vtigecpkyvrsaklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4edbC (C:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncsvagw
ilgnpecelliskeswsyivekpnpengtcypghfadyeelreqlssvssferfemfpke
sswpnhtvtgvsascshngkssfyknllwltgknglypnlsksyannkekevlvlwgvhh
ppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepgdtii
feangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhpvtig
ecpkyvrsaklrmvtglrnipsi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4edbD (D:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydypkyseesklnrekidgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4edbD (D:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydyp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4edbE (E:)
adpgdticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncs
vagwilgnpecelliskeswsyivekpnpengtcypghfadyeelreqlssvssferfem
fpkesswpnhtvtgvsascshngkssfyknllwltgknglypnlsksyannkekevlvlw
gvhhppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepg
dtiifeangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhp
vtigecpkyvrsaklrmvtglrnipsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >4edbE (E:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcllkgiaplqlgncsvagw
ilgnpecelliskeswsyivekpnpengtcypghfadyeelreqlssvssferfemfpke
sswpnhtvtgvsascshngkssfyknllwltgknglypnlsksyannkekevlvlwgvhh
ppnigdqralyhtenayvsvvsshysrkftpeiakrpkvrdqegrinyywtllepgdtii
feangnliapryafalsrgfgsgiinsnapmdecdakcqtpqgainsslpfqnvhpvtig
ecpkyvrsaklrmvtglrnipsi

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4edbF (F:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydypkyseesklnrekidgvrslv
pr

    Sequence, based on observed residues (ATOM records): (download) 
    >4edbF (F:)
glfgaiagfieggwtgmvdgwygyhhqneqgsgyaadqkstqnaingitnkvnsviekmn
tqftavgkefnklerrmenlnkkvddgfidiwtynaellvllenertldfhdsnvknlye
kvksqlknnakeigngcfefyhkcndecmesvkngtydyp