PDB entry 4dwr

View 4dwr on RCSB PDB site
Description: RNA ligase RtcB/Mn2+ complex
Class: ligase
Keywords: RNA ligase, RtcB, Mn2+, LIGASE
Deposited on 2012-02-26, released 2012-09-05
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-12-19, with a file datestamp of 2012-12-14.
Experiment type: XRAY
Resolution: 1.48 Å
R-factor: 0.144
AEROSPACI score: 0.68 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA-splicing ligase RtcB
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O59245 (Start-96)
    • Uniprot O59245 (97-480)
      • expression tag (481-483)
    Domains in SCOPe 2.05: d4dwra_
  • Chain 'B':
    Compound: tRNA-splicing ligase RtcB
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O59245 (Start-96)
    • Uniprot O59245 (97-480)
      • expression tag (481-486)
    Domains in SCOPe 2.05: d4dwrb_
  • Chain 'C':
    Compound: tRNA-splicing ligase RtcB
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O59245 (Start-96)
    • Uniprot O59245 (97-480)
      • expression tag (481-485)
    Domains in SCOPe 2.05: d4dwrc_
  • Heterogens: SUC, MN, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dwrA (A:)
mvvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykys
ivmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlv
dtlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadp
eavsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrgl
ghqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmit
hwvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppg
heavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyr
gdrirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvak
gaaaleh

    Sequence, based on observed residues (ATOM records): (download) 
    >4dwrA (A:)
vvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykysi
vmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlvd
tlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadpe
avsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrglg
hqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmith
wvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppgh
eavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyrg
drirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvakg
aaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dwrB (B:)
mvvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykys
ivmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlv
dtlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadp
eavsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrgl
ghqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmit
hwvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppg
heavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyr
gdrirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvak
gaaaleh

    Sequence, based on observed residues (ATOM records): (download) 
    >4dwrB (B:)
vvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykysi
vmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlvd
tlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadpe
avsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrglg
hqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmith
wvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppgh
eavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyrg
drirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvakg
aaaleh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4dwrC (C:)
mvvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykys
ivmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlv
dtlfknvpsgvgsqgriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadp
eavsqrakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrgl
ghqvasdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmit
hwvresfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppg
heavprlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyr
gdrirqellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvak
gaaaleh

    Sequence, based on observed residues (ATOM records): (download) 
    >4dwrC (C:)
vvplkridkirweipkfdkrmrvpgrvyadevllekmkndrtleqatnvamlpgiykysi
vmpdghqgygfpiggvaafdvkegvispggigydincgvrlirtnltekevrprikqlvd
tlfknvpsgvriklhwtqiddvlvdgakwavdngygwerdlerleeggrmegadpeavsq
rakqrgapqlgslgsgnhflevqvvdkifdpevakayglfegqvvvmvhtgsrglghqva
sdylrimerairkyripwpdrelvsvpfqseegqryfsamkaaanfawanrqmithwvre
sfqevfkqdpegdlgmdivydvahnigkveehevdgkrvkvivhrkgatrafppgheavp
rlyrdvgqpvlipgsmgtasyilagtegamketfgstchgagrvlsrkaatrqyrgdrir
qellnrgiyvraasmrvvaeeapgayknvdnvvkvvseagiaklvarmrpigvakgaaal
e