PDB entry 4dvr
View 4dvr on RCSB PDB site
Description: Crystal structure of YU2 gp120 core in complex with Fab 48d and NBD-557
Class: immune system/transcription inhibitor
Keywords: HIV-1 gp120, CD4 binding site, NBD-557, IMMUNE SYSTEM-TRANSCRIPTION INHIBITOR complex
Deposited on
2012-02-23, released
2013-02-27
The last revision prior to the SCOPe 2.04 freeze date was dated
2014-03-19, with a file datestamp of
2014-03-14.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.233
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'G':
Compound: envelope glycoprotein gp160
Species: Human immunodeficiency virus type 1 (isolate YU2) [TaxId:362651]
Gene: env, HIV-1 Env
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4dvrg_ - Chain 'H':
Compound: Fab 48d heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4dvrh1, d4dvrh2 - Chain 'L':
Compound: Fab 48d light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d4dvrl1, d4dvrl2 - Heterogens: NAG, 0LY, HOH
PDB Chain Sequences:
- Chain 'G':
Sequence, based on SEQRES records: (download)
>4dvrG (G:)
evklenvtenfnmwknnmveqmhediislwdqslkpcvkltggsvitqacpkvsfepipi
hycapagfailkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeeeivirse
nftnnaktiivqlnesvvinctrpnnggsgsggdirqahcnlsktqwentleqiaiklke
qfgnnktiifnpssggdpeivthsfncggeffycnstqlftwndtrklnntgrnitlpcr
ikqiinmwqevgkamyappirgqircssnitgllltrdggkdtngteifrpgggdmrdnw
rselykykvvkie
Sequence, based on observed residues (ATOM records): (download)
>4dvrG (G:)
tenfnmwknnmveqmhediislwdqslkpcvkltggsvitqacpkvsfepipihycapag
failkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeeeivirsenftnnak
tiivqlnesvvinctrpnngdirqahcnlsktqwentleqiaiklkeqfgnnktiifnps
sggdpeivthsfncggeffycnstqlftwndtrnitlpcrikqiinmwqevgkamyappi
rgqircssnitgllltrdngteifrpgggdmrdnwrselykykvvkie
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>4dvrH (H:)
evqlvqsgaevkkpgatvkisckasgytfsdfymywvrqapgkglewmglidpedadtmy
aekfrgrvtitadtstdtgylelsslrsedtavyycaadpwelnafnvwgqgtlvsvssa
stkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
- Chain 'L':
Sequence, based on SEQRES records: (download)
>4dvrL (L:)
diqmtqspssvsasvgdrvtitcrasqdistwlawyqqkpgkapklliyaastlqsgvps
rfsgsgsgtdfsltinslqpedfatyycqqansfftfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhklyacevthqglsspvtksfnrge
Sequence, based on observed residues (ATOM records): (download)
>4dvrL (L:)
iqmtqspssvsasvgdrvtitcrasqdistwlawyqqkpgkapklliyaastlqsgvpsr
fsgsgsgtdfsltinslqpedfatyycqqansfftfgggtkveikrtvaapsvfifppsd
eqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltls
kadyekhklyacevthqglsspvtksfnrge