PDB entry 4dr9

View 4dr9 on RCSB PDB site
Description: Crystal structure of a peptide deformylase from synechococcus elongatus in complex with actinonin
Class: hydrolase/hydrolase inhibitor
Keywords: HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on 2012-02-17, released 2013-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-11, with a file datestamp of 2018-04-06.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4dr9a_
  • Chain 'B':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4dr9b_
  • Chain 'C':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4dr9c_
  • Chain 'D':
    Compound: Peptide deformylase
    Species: Synechococcus elongatus [TaxId:269084]
    Gene: def, syc0213_d, YP_170923
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4dr9d_
  • Heterogens: ZN, BR, BB2, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dr9A (A:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr9A (A:)
taavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgig
laapqvginkqlividlelpplvlinpkiertagdleqcqegclsipgvyldverpeive
vsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfavqavr
pv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dr9B (B:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr9B (B:)
airvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgiglaap
qvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldverpeiv
evsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfavqav
rp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4dr9C (C:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr9C (C:)
vairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgiglaa
pqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldverpei
vevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfavqa
vrpv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4dr9D (D:)
staavairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgi
glaapqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldve
rpeivevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgf
avqavrpvaaas

    Sequence, based on observed residues (ATOM records): (download) 
    >4dr9D (D:)
vairvakkklakppldlhylgdrvlrqpakrvsriddelrqtirqmlqtmysadgiglaa
pqvginkqlividleledeqapplvlinpkiertagdleqcqegclsipgvyldverpei
vevsykdengrpqrlvadgllarciqhemdhlngvlfvdrvenrlelnealdkkgfavqa
vrpv