PDB entry 4dqs

View 4dqs on RCSB PDB site
Description: Binary complex of Bacillus DNA Polymerase I Large Fragment and duplex DNA with rC in primer terminus paired with dG of template
Class: transferase/DNA
Keywords: DNA Polymerase I, protein-DNA complex, rC-dG, TRANSFERASE-DNA complex
Deposited on 2012-02-16, released 2012-06-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-11-21, with a file datestamp of 2012-11-16.
Experiment type: XRAY
Resolution: 1.66 Å
R-factor: 0.161
AEROSPACI score: 0.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Geobacillus kaustophilus [TaxId:235909]
    Gene: polA, GK2730
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5KWC1 (Start-591)
      • see remark 999 (538)
    Domains in SCOPe 2.07: d4dqsa1, d4dqsa2
  • Chain 'B':
    Compound: DNA/RNA (5'-d(*gp*cp*gp*ap*tp*cp*ap*cp*gp*tp*a)-r(p*c)-3')
  • Chain 'C':
    Compound: DNA (5'-d(*gp*a*cp*gp*tp*ap*cp*gp*tp*gp*ap*tp*cp*gp*cp*a)-3')
  • Heterogens: CTP, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dqsA (A:)
mespsseeekplakmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrf
flrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpa
qgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpflde
lrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagq
efninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklq
styiegllkvvrpdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpse
sdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrq
akavnfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvt
tllhrrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahl
llqvhdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

    Sequence, based on observed residues (ATOM records): (download) 
    >4dqsA (A:)
kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqf
vawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmk
qyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllvel
eqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvi
lfeklqlpvlystsadvleklapyheivenilhyrqlgklqstyiegllkvvrpdtkkvh
tifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysqielrvla
hiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygisdyglaq
nlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnv
rsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelileapkeemer
lcrlvpevmeqavtlrvplkvdyhygstwydak

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.