PDB entry 4dpv

View 4dpv on RCSB PDB site
Description: parvovirus/DNA complex
Class: Virus/DNA
Keywords: COMPLEX (VIRUS/DNA), FULL CAPSID, SINGLE-STRANDED DNA, VIRUS, Icosahedral virus
Deposited on 1996-02-01, released 1997-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.283
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'N':
    Compound: DNA (5'-d(*ap*tp*ap*cp*cp*tp*cp*tp*tp*gp*c)-3')
  • Chain 'Z':
    Compound: protein (parvovirus coat protein)
    Species: Canine parvovirus [TaxId:10788]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4dpvz_
  • Heterogens: MG

PDB Chain Sequences:

  • Chain 'N':
    No sequence available.

  • Chain 'Z':
    Sequence, based on SEQRES records: (download)
    >4dpvZ (Z:)
    msdgavqpdggqpavrneratgsgngsgggggggsggvgistgtfnnqtefkflengwve
    itanssrlvhlnmpesenyrrvvvnnmdktavngnmalddihaqivtpwslvdanawgvw
    fnpgdwqlivntmselhlvsfeqeifnvvlktvsesatqpptkvynndltaslmvaldsn
    ntmpftpaamrsetlgfypwkptiptpwryyfqwdrtlipshtgtsgtptniyhgtdpdd
    vqfytiensvpvhllrtgdefatgtfffdckpcrlthtwqtnralglppflnslpqsega
    tnfgdigvqqdkrrgvtqmgntnyiteatimrpaevgysapyysfeastqgpfktpiaag
    rggaqtdenqaadgnpryafgrqhgqkttttgetperftyiahqdtgrypegdwiqninf
    nlpvtndnvllptdpiggktginytnifntygpltalnnvppvypngqiwdkefdtdlkp
    rlhvnapfvcqnncpgqlfvkvapnltneydpdasanmsrivtysdfwwkgklvfkaklr
    ashtwnpiqqmsinvdnqfnyvpsniggmkivyeksqlaprkly
    

    Sequence, based on observed residues (ATOM records): (download)
    >4dpvZ (Z:)
    gsgngsgggggggsggvgistgtfnnqtefkflengwveitanssrlvhlnmpesenyrr
    vvvnnmdktavngnmalddihaqivtpwslvdanawgvwfnpgdwqlivntmselhlvsf
    eqeifnvvlktvsepptkvynndltaslmvaldsnntmpftpaamrsetlgfypwkptip
    tpwryyfqwdrtlipshtgtsgtptniyhgtdpddvqfytiensvpvhllrtgdefatgt
    fffdckpcrlthtwqtnralglppflnslpqsegatnfgdigvqqdkrrgvtqmgntnyi
    teatimrpaevgysapyysfeastqgpfktpiaagrggaqtdenqaadgnpryafgrqhg
    qkttttgetperftyiahqdtgrypegdwiqninfnlpvtndnvllptdpiggktginyt
    nifntygpltalnnvppvypngqiwdkefdtdlkprlhvnapfvcqnncpgqlfvkvapn
    ltneydpdasanmsrivtysdfwwkgklvfkaklrashtwnpiqqmsinvdnqfnyvpsn
    iggmkivyeksqlaprkly